RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CATIPQ7Z7H3 387 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 HERC6Q8IVU3 1022 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 MB21D2Q8IYB1 491 aaPredicted RBP13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 MICALL1Q8N3F8 863 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 PHOSPHO2Q8TCD6 241 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 PIBF1Q8WXW3 757 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 GPKOWQ92917 476 aaPredicted RBP eCLIP13.37□□□□□ -0.273e-16■□□□□ 9.9
HMGCS1-204ENST00000507293 CERS4Q9HA82 394 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 RBM8AQ9Y5S9 174 aaKnown RBP13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 MICAL3Q7RTP6 2002 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 PNMA6FA0A0J9YX94 578 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 RFXAPO00287 272 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 ARHGEF15O94989 841 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 CKBP12277 381 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 SP2Q02086 613 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 PTK7Q13308 1070 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 HSDL1Q3SXM5 330 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 MAP4K1Q92918 833 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 SPATA33Q96N06 139 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 MYL10Q9BUA6 226 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 SIP14410 1827 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 FRMPD4Q14CM0 1322 aa13.36□□□□□ -0.27
HMGCS1-204ENST00000507293 RBAK-RBAKDNI3L0D1 243 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 NBNO60934 754 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 KCNJ6P48051 423 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 WDR5P61964 334 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 ZNF200P98182 395 aaPredicted RBP13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 TAP1Q03518 808 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 HIC1Q14526 733 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 TRIM71Q2Q1W2 868 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 CNKSR3Q6P9H4 555 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 ZNF654Q8IZM8 581 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 IGDCC4Q8TDY8 1250 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 ATXN2LQ8WWM7 1075 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 WNT8BQ93098 351 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 MLXIPQ9HAP2 919 aa13.35□□□□□ -0.27
HMGCS1-204ENST00000507293 CHD9Q3L8U1 2897 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 TCF20Q9UGU0 1960 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 A0A0C4DFX4 3053 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 EPOPA6NHQ4 379 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 KIF28PB7ZC32 967 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 PPFIA4O75335 1185 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 DDAH1O94760 285 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 PARNO95453 639 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 CXCL10P02778 98 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 TGFB3P10600 412 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 DEFB103AP81534 67 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 MRPS9P82933 396 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 TCTN1Q2MV58 587 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 GNPTABQ3T906 1256 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 TRAF7Q6Q0C0 670 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 TMCO2Q7Z6W1 182 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 CTCFLQ8NI51 663 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 ARNTL2Q8WYA1 636 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 ASB2Q96Q27 587 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 C16orf70Q9BSU1 422 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 LY9Q9HBG7 655 aa13.34□□□□□ -0.27
HMGCS1-204ENST00000507293 PRUNE2Q8WUY3 3088 aa13.33□□□□□ -0.27
HMGCS1-204ENST00000507293 PRRC2BQ5JSZ5 2229 aaKnown RBP13.33□□□□□ -0.27
HMGCS1-204ENST00000507293 PRC1O43663 620 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 GTPBP6O43824 516 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 TLL1O43897 1013 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 LGALS2P05162 132 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 MRPS5P82675 430 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 SEMA3FQ13275 785 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 CASC1Q6TDU7 716 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 RRP36Q96EU6 259 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 SPZ1Q9BXG8 430 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 BCAS3Q9H6U6 928 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 MTCH2Q9Y6C9 303 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 KAT6AQ92794 2004 aa13.33□□□□□ -0.28
HMGCS1-204ENST00000507293 LCHNA4D1U4 455 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 TNFRSF10AO00220 468 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 NOP56O00567 594 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 STAM2O75886 525 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 PLEKHA8P1O95397 391 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 ICAM3P32942 547 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 KIF5BP33176 963 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 COL9A3Q14050 684 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 MBTPS1Q14703 1052 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 KRT40Q6A162 431 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 NFXL1Q6ZNB6 911 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 SPRED2Q7Z698 418 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 SERINC5Q86VE9 423 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 ADAMTS19Q8TE59 1207 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 INPP4AQ96PE3 977 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 MAP3K14Q99558 947 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 ZBED2Q9BTP6 218 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 LSG1Q9H089 658 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 TSPYL2Q9H2G4 693 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 RTEL1Q9NZ71 1219 aa13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 SEC63Q9UGP8 760 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-204ENST00000507293 ABHD14A-ACY1A0A1B0GW23 586 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 C17orf102A2RUQ5 167 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 SPATA31C2B4DYI2 1134 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 H3BRB1 525 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 SH2B2O14492 632 aaPredicted RBP13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 FIBPO43427 364 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms