RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SMPD1P17405 629 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 TNFAIP2Q03169 654 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 NBR1Q14596 966 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 TTLL4Q14679 1199 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 LY6KQ17RY6 165 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 GJC2Q5T442 439 aaPredicted RBP13.52□□□□□ -0.25
CUX1-210ENST00000497815 IQSEC1Q6DN90 963 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 FAM173BQ6P4H8 233 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 ARMC5Q96C12 935 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.52□□□□□ -0.254e-7■■■■■ 40.8
CUX1-210ENST00000497815 RNF208Q9H0X6 261 aa13.52□□□□□ -0.25
CUX1-210ENST00000497815 DDX25Q9UHL0 483 aaKnown RBP13.52□□□□□ -0.25
CUX1-210ENST00000497815 MCM3APO60318 1980 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 IGLV3-22A0A075B6J6 115 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 RBM47A0AV96 593 aaKnown RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 SPATA31C2B4DYI2 1134 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 MEIS1O00470 390 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 CIITAP33076 1130 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 MCM7P33993 719 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 SEMA3FQ13275 785 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 ZNF174Q15697 407 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 FOXD4L6Q3SYB3 417 aaPredicted RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 TTC38Q5R3I4 469 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 FOXD4L3Q6VB84 417 aaPredicted RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 BRAPQ7Z569 592 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 COPS5Q92905 334 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 GPRASP2Q96D09 838 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 IPO9Q96P70 1041 aaKnown RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 KCNH7Q9NS40 1196 aa13.51□□□□□ -0.25
CUX1-210ENST00000497815 DDX20Q9UHI6 824 aaKnown RBP13.51□□□□□ -0.25
CUX1-210ENST00000497815 CYP3A7-CYP3A51PA0A087WV96 503 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 SLC37A4O43826 429 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 ATP9AO75110 1047 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 F13A1P00488 732 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 RARBP10826 455 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 PDIA4P13667 645 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 GCFC2P16383 781 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 UBA1P22314 1058 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 CYP3A7P24462 503 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 TOB1P50616 345 aaPredicted RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 SETQ01105 290 aaPredicted RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 SP2Q02086 613 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 DUSP28Q4G0W2 176 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 CCDC62Q6P9F0 684 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 NIPA1Q7RTP0 329 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 GJA10Q969M2 543 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 CDHR1Q96JP9 859 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 DEFB118Q96PH6 123 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 NAP1L4Q99733 375 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 BCAS3Q9H6U6 928 aa13.5□□□□□ -0.25
CUX1-210ENST00000497815 AGO4Q9HCK5 861 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 DDX41Q9UJV9 622 aaKnown RBP13.5□□□□□ -0.25
CUX1-210ENST00000497815 MYH7BA7E2Y1 1941 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 DDX39AO00148 427 aaKnown RBP13.49□□□□□ -0.25
CUX1-210ENST00000497815 DYNC1LI2O43237 492 aaPredicted RBP13.49□□□□□ -0.25
CUX1-210ENST00000497815 MARCH6O60337 910 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 NEMFO60524 1076 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 GGPS1O95749 300 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 ICAM3P32942 547 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 SP4Q02446 784 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 Q4G0T1 1027 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 RILPL1Q5EBL4 403 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 MYSM1Q5VVJ2 828 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 PPP4R3AQ6IN85 833 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 KCNV1Q6PIU1 500 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 MOXD1Q6UVY6 613 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 TLK2Q86UE8 772 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 OR6J1Q8NGC5 347 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 LENG9Q96B70 501 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 MBOAT7Q96N66 472 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 ZNF577Q9BSK1 485 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 ZSCAN16Q9H4T2 348 aaPredicted RBP13.49□□□□□ -0.25
CUX1-210ENST00000497815 XPNPEP3Q9NQH7 507 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 PAK6Q9NQU5 681 aaPredicted RBP13.49□□□□□ -0.25
CUX1-210ENST00000497815 ZDHHC9Q9Y397 364 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 PCDHB6Q9Y5E3 794 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 HTTP42858 3142 aa13.49□□□□□ -0.25
CUX1-210ENST00000497815 IPO5O00410 1097 aaKnown RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 MSH4O15457 936 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 MAFGO15525 162 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 DUSP11O75319 330 aaKnown RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 BRD1O95696 1058 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 PGK1P00558 417 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 GH1P01241 217 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 TGFB3P10600 412 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 KCNA2P16389 499 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 DDIT3P35638 169 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 TRAPPC10P48553 1259 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 IRX5P78411 483 aaPredicted RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 CEBPZQ03701 1054 aaKnown RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 ITGB3BPQ13352 177 aaPredicted RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 LHX8Q68G74 356 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 CYFIP1Q7L576 1253 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 DHX37Q8IY37 1157 aaKnown RBP13.48□□□□□ -0.25
CUX1-210ENST00000497815 TNS4Q8IZW8 715 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 TMEM106CQ9BVX2 250 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 AP5M1Q9H0R1 490 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 MLXIPQ9HAP2 919 aa13.48□□□□□ -0.25
CUX1-210ENST00000497815 GNEQ9Y223 722 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms