RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 UBXN4Q92575 508 aa8.67□□□□□ -1.02
SF3B1-212ENST00000496458 DHRS4Q9BTZ2 278 aa8.67□□□□□ -1.02
SF3B1-212ENST00000496458 PCDHB4Q9Y5E5 795 aa8.67□□□□□ -1.02
SF3B1-212ENST00000496458 LONRF2Q1L5Z9 754 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 EMC4Q5J8M3 183 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 PIP4K2CQ8TBX8 421 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 FNIP1Q8TF40 1166 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 DDX11Q96FC9 970 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 KCNJ15Q99712 375 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 YIPF4Q9BSR8 244 aa8.66□□□□□ -1.02
SF3B1-212ENST00000496458 CDK11AQ9UQ88 783 aaPredicted RBP8.66□□□□□ -1.02
SF3B1-212ENST00000496458 MRPS23Q9Y3D9 190 aaKnown RBP8.66□□□□□ -1.02
SF3B1-212ENST00000496458 SOD2P04179 222 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 C6orf222P0C671 652 aaPredicted RBP8.65□□□□□ -1.02
SF3B1-212ENST00000496458 CYP2C8P10632 490 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 STAT5AP42229 794 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 MAMDC2Q7Z304 686 aaPredicted RBP8.65□□□□□ -1.02
SF3B1-212ENST00000496458 FAM126BQ8IXS8 530 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 FAM26EQ8N5C1 309 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 ARRDC4Q8NCT1 418 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 PTPRN2Q92932 1015 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 NOX5Q96PH1 765 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 ALG1Q9BT22 464 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 KRTAP9-9Q9BYP9 154 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 KRTAP9-4Q9BYQ2 154 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 MYOTQ9UBF9 498 aa8.65□□□□□ -1.02
SF3B1-212ENST00000496458 TCRBV5S2A0A599 114 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 KRIT1O00522 736 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 TADA3O75528 432 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 HTRA3P83110 453 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 NFE2L2Q16236 605 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 CD300LDQ6UXZ3 194 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 MTDHQ86UE4 582 aaKnown RBP8.64□□□□□ -1.03
SF3B1-212ENST00000496458 SYT3Q9BQG1 590 aa8.64□□□□□ -1.03
SF3B1-212ENST00000496458 AQP7O14520 342 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 MAFKO60675 156 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 GNAT1P11488 350 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 COL6A2P12110 1019 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 BMP7P18075 431 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 VWA3BQ502W6 1294 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 FBLN7Q53RD9 439 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 ZC3H12BQ5HYM0 836 aaKnown RBP8.63□□□□□ -1.03
SF3B1-212ENST00000496458 ZC3H18Q86VM9 953 aaKnown RBP8.63□□□□□ -1.03
SF3B1-212ENST00000496458 THAP3Q8WTV1 239 aaPredicted RBP8.63□□□□□ -1.03
SF3B1-212ENST00000496458 KISS1RQ969F8 398 aaPredicted RBP8.63□□□□□ -1.03
SF3B1-212ENST00000496458 LNPKQ9C0E8 428 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 SMOC1Q9H4F8 434 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 ZSWIM4Q9H7M6 989 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 IPPKQ9H8X2 491 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 SLC6A20Q9NP91 592 aa8.63□□□□□ -1.03
SF3B1-212ENST00000496458 FAM47E-STBD1D6RA91 191 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 FFAR3O14843 346 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 TRIM13O60858 407 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 GABREP78334 506 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 OTOP3Q7RTS5 596 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 LILRB2Q8N423 598 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 LINC01356Q8N9X3 169 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 ZSWIM2Q8NEG5 633 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 ZBTB8AQ96BR9 441 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 GORASP1Q9BQQ3 440 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 PTCH2Q9Y6C5 1203 aa8.62□□□□□ -1.03
SF3B1-212ENST00000496458 SLC27A2O14975 620 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 CAP1Q01518 475 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 SPIRE1Q08AE8 756 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 SMAD4Q13485 552 aaKnown RBP8.61□□□□□ -1.03
SF3B1-212ENST00000496458 C2orf27AQ580R0 203 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 CYP4F22Q6NT55 531 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 ADGRG2Q8IZP9 1017 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 JMYQ8N9B5 988 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 TP53I13Q8NBR0 393 aaPredicted RBP8.61□□□□□ -1.03
SF3B1-212ENST00000496458 PHOSPHO1Q8TCT1 267 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 MRFAP1L1Q96HT8 127 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 DTLQ9NZJ0 730 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 ASH2LQ9UBL3 628 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 PCDHA8Q9Y5H6 950 aa8.61□□□□□ -1.03
SF3B1-212ENST00000496458 A0A1B0GTL3 188 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 GUCY1A3Q02108 690 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 PAK1Q13153 545 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 CR1LQ2VPA4 569 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 CCDC144BQ3MJ40 725 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 SAPCD2Q86UD0 394 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 STK32CQ86UX6 486 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 RBM12BQ8IXT5 1001 aaKnown RBP8.6□□□□□ -1.03
SF3B1-212ENST00000496458 ZNF526Q8TF50 670 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-212ENST00000496458 TOE1Q96GM8 510 aaKnown RBP8.6□□□□□ -1.03
SF3B1-212ENST00000496458 NDOR1Q9UHB4 597 aa8.6□□□□□ -1.03
SF3B1-212ENST00000496458 NKRFO15226 690 aaKnown RBP eCLIP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 INHBBP09529 407 aa8.59□□□□□ -1.03
SF3B1-212ENST00000496458 NKX3-2P78367 333 aa8.59□□□□□ -1.03
SF3B1-212ENST00000496458 DLX2Q07687 328 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 MARCH10Q8NA82 808 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 UHMK1Q8TAS1 419 aaKnown RBP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 C11orf84Q9BUA3 381 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 ZCCHC4Q9H5U6 513 aa8.59□□□□□ -1.03
SF3B1-212ENST00000496458 SLC52A2Q9HAB3 445 aa8.59□□□□□ -1.03
SF3B1-212ENST00000496458 NGRNQ9NPE2 291 aaKnown RBP8.59□□□□□ -1.03
SF3B1-212ENST00000496458 PCDHA9Q9Y5H5 950 aa8.59□□□□□ -1.03
SF3B1-212ENST00000496458 ITGA1P56199 1179 aa8.58□□□□□ -1.04
SF3B1-212ENST00000496458 GRIN1Q05586 938 aa8.58□□□□□ -1.04
SF3B1-212ENST00000496458 HABP4Q5JVS0 413 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms