RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	BRDT	Q58F21	947 aa	Predicted RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	XRRA1	Q6P2D8	792 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	NLRX1	Q86UT6	975 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	DHX37	Q8IY37	1157 aa	Known RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	NSUN7	Q8NE18	718 aa	Known RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	BICD2	Q8TD16	824 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	PPP1R13L	Q8WUF5	828 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	INPP4A	Q96PE3	977 aa	Predicted RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ALG1	Q9BT22	464 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	BCAS3	Q9H6U6	928 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	MLXIP	Q9HAP2	919 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	SH3GLB2	Q9NR46	395 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	NR2E3	Q9Y5X4	410 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	STK36	Q9NRP7	1315 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	SPATA31C2	B4DYI2	1134 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024		H0YGN5	161 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	FIBP	O43427	364 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	STAM2	O75886	525 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	CD2BP2	O95400	341 aa	Known RBP	11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	FDPS	P14324	419 aa	Known RBP	11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	SYN1	P17600	705 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	ITGB5	P18084	799 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	UBA1	P22314	1058 aa	Known RBP	11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	PSMC6	P62333	389 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	NKX3-2	P78367	333 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	ARHGAP4	P98171	946 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	SP4	Q02446	784 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	SEMA3F	Q13275	785 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	TRIM60	Q495X7	471 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	KCNV1	Q6PIU1	500 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	CYP2W1	Q8TAV3	490 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	WASF1	Q92558	559 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	UIMC1	Q96RL1	719 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	POLR3E	Q9NVU0	708 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024	PCDHA4	Q9UN74	947 aa		11.22	□□□□□ -0.61
CALD1-223	ENST00000496024		A6NJR5	290 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	PQBP1	O60828	265 aa	Known RBP	11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	MMP3	P08254	477 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	TGFB3	P10600	412 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	XBP1	P17861	261 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	ICAM3	P32942	547 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	SREBF1	P36956	1147 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	TLE2	Q04725	743 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	MTMR1	Q13613	665 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	LAMC2	Q13753	1193 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	CELF3	Q5SZQ8	465 aa	Known RBP	11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	MYSM1	Q5VVJ2	828 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	CYFIP1	Q7L576	1253 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	TEX2	Q8IWB9	1127 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	BLID	Q8IZY5	108 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	SPATA33	Q96N06	139 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	UBIAD1	Q9Y5Z9	338 aa		11.21	□□□□□ -0.61
CALD1-223	ENST00000496024	ELP1	O95163	1332 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024		A0A0U1RQG5	324 aa	Predicted RBP	11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	NOP56	O00567	594 aa	Known RBP	11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	ATP9A	O75110	1047 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	AR	P10275	920 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	PURA	Q00577	322 aa	Known RBP	11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	GUCY1B3	Q02153	619 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	NEDD9	Q14511	834 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	NPY5R	Q15761	445 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	HSDL1	Q3SXM5	330 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	CEP55	Q53EZ4	464 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	MCTP2	Q6DN12	878 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	OXER1	Q8TDS5	423 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	GPRASP2	Q96D09	838 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	MXRA8	Q9BRK3	442 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	MTG1	Q9BT17	334 aa	Predicted RBP	11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	PHF20	Q9BVI0	1012 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	JADE2	Q9NQC1	790 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	TELO2	Q9Y4R8	837 aa		11.2	□□□□□ -0.62
CALD1-223	ENST00000496024	GRIN2D	O15399	1336 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	FAM86B1	E9PN63	330 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	ARVCF	O00192	962 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	CABYR	O75952	493 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	FAM86B2	P0C5J1	330 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	ZNF286B	P0CG31	522 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	ITGA7	Q13683	1181 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	TRIM29	Q14134	588 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	SNX17	Q15036	470 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	DGKD	Q16760	1214 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	FAM47C	Q5HY64	1035 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	PLA2G4D	Q86XP0	818 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	DAGLB	Q8NCG7	672 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	PPTC7	Q8NI37	304 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	TBCK	Q8TEA7	893 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	EMID1	Q96A84	441 aa	Predicted RBP	11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	TMX3	Q96JJ7	454 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	CDHR1	Q96JP9	859 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	LLPH	Q9BRT6	129 aa	Known RBP	11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	KCNH7	Q9NS40	1196 aa		11.19	□□□□□ -0.62
CALD1-223	ENST00000496024	SCN10A	Q9Y5Y9	1956 aa		11.18	□□□□□ -0.62
CALD1-223	ENST00000496024	CCDC194	A0A1B0GVG4	234 aa		11.18	□□□□□ -0.62
CALD1-223	ENST00000496024	DCDC2C	A8MYV0	355 aa		11.18	□□□□□ -0.62
CALD1-223	ENST00000496024	DDX39A	O00148	427 aa	Known RBP	11.18	□□□□□ -0.62
CALD1-223	ENST00000496024	MEIS1	O00470	390 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms