RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	TCTN1	Q2MV58	587 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	HSDL1	Q3SXM5	330 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	MYSM1	Q5VVJ2	828 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	CREB3L3	Q68CJ9	461 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	SESTD1	Q86VW0	696 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	PPTC7	Q8NI37	304 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	HDAC6	Q9UBN7	1215 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	hCG_1642624	A0A1W2PR95	340 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	ZBBX	A8MT70	800 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	HAS3	O00219	553 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	DDAH1	O94760	285 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	GGPS1	O95749	300 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	IQCF3	P0C7M6	154 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	POLR2M	P0CAP2	368 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	PSEN2	P49810	448 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	ZNF200	P98182	395 aa	Predicted RBP	13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	USP17L6P	Q6QN14	398 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	SPRED2	Q7Z698	418 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	CATIP	Q7Z7H3	387 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	SRBD1	Q8N5C6	995 aa	Known RBP	13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	ALG1	Q9BT22	464 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	SPZ1	Q9BXG8	430 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	PRDM6	Q9NQX0	595 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	GTF2IRD1	Q9UHL9	959 aa		13.48	□□□□□ -0.25
VTI1A-208	ENST00000494728	LOXHD1	Q8IVV2	1947 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	CAST	P20810	708 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	CCND2	P30279	289 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	MFSD10	Q14728	455 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	RAB30	Q15771	203 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	DGKD	Q16760	1214 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	KIAA0753	Q2KHM9	967 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	TRIM71	Q2Q1W2	868 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	CELF3	Q5SZQ8	465 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	TRAF7	Q6Q0C0	670 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	DHX37	Q8IY37	1157 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	RPUSD2	Q8IZ73	545 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	TCEANC2	Q96MN5	208 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	ANO2	Q9NQ90	1003 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	MAP3K20	Q9NYL2	800 aa	Known RBP	13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	SLC4A7	Q9Y6M7	1214 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	ATG2A	Q2TAZ0	1938 aa		13.47	□□□□□ -0.25
VTI1A-208	ENST00000494728	MEIS2	O14770	477 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	PFKM	P08237	780 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	ATP2A2	P16615	1042 aa	Known RBP	13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	MCM5	P33992	734 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	RBL2	Q08999	1139 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	LAMC2	Q13753	1193 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	MBTPS1	Q14703	1052 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	BMP2KL	Q5H9B9	411 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	CASC1	Q6TDU7	716 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	SPATA33	Q96N06	139 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	INPP4A	Q96PE3	977 aa	Predicted RBP	13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	MAP3K14	Q99558	947 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	C16orf70	Q9BSU1	422 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	MTIF3	Q9H2K0	278 aa	Known RBP	13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	NOD1	Q9Y239	953 aa		13.46	□□□□□ -0.25
VTI1A-208	ENST00000494728	NLRC5	Q86WI3	1866 aa		13.46	□□□□□ -0.26
VTI1A-208	ENST00000494728	CNTNAP5	Q8WYK1	1306 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	WDR81	Q562E7	1941 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	EPOP	A6NHQ4	379 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	NBN	O60934	754 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	CA3	P07451	260 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	CKB	P12277	381 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	RFC2	P35250	354 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	BFSP2	Q13515	415 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	UBE2S	Q16763	222 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	ADCK5	Q3MIX3	580 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	LRRC8D	Q7L1W4	858 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	MICU3	Q86XE3	530 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	TRIM50	Q86XT4	487 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	RASEF	Q8IZ41	740 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	SAMD3	Q8N6K7	520 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	C7orf31	Q8N865	590 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	CTCFL	Q8NI51	663 aa	Predicted RBP	13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	CAGE1	Q8TC20	777 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	AFAP1L1	Q8TED9	768 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	RRP36	Q96EU6	259 aa	Known RBP	13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	TMEM87B	Q96K49	555 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	OSBPL7	Q9BZF2	842 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	MSRA	Q9UJ68	235 aa		13.45	□□□□□ -0.26
VTI1A-208	ENST00000494728	TCF20	Q9UGU0	1960 aa	Known RBP	13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	LGALS2	P05162	132 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	SELP	P16109	830 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	HOXC8	P31273	242 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	ICAM3	P32942	547 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	LIFR	P42702	1097 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	DEFB103A	P81534	67 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	PPP2R2D	Q66LE6	453 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	NFXL1	Q6ZNB6	911 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	TMTC3	Q6ZXV5	915 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	CCDC82	Q8N4S0	544 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	MTA3	Q9BTC8	594 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	SLC28A3	Q9HAS3	691 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	RTEL1	Q9NZ71	1219 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	PCDHA11	Q9Y5I1	949 aa		13.44	□□□□□ -0.26
VTI1A-208	ENST00000494728	C5orf42	Q9H799	3197 aa		13.44	□□□□□ -0.26

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