RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 XIRP2A4UGR9 3374 aa20.21■□□□□ 0.83
COL9A1-210ENST00000493682 LCHNA4D1U4 455 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 PALM3A6NDB9 673 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-210ENST00000493682 ZBTB5O15062 677 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 MYCLP12524 364 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-210ENST00000493682 HOXD8P13378 290 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-210ENST00000493682 COL9A1P20849 921 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 HOXA13P31271 388 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-210ENST00000493682 KCNQ1P51787 676 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 DEFB103AP81534 67 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 PTK7Q13308 1070 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 GRB10Q13322 594 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 TCTN1Q2MV58 587 aa20.2■□□□□ 0.82
COL9A1-210ENST00000493682 MAP3K20Q9NYL2 800 aaKnown RBP20.2■□□□□ 0.82
COL9A1-210ENST00000493682 PTPRSQ13332 1948 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 PRRC2BQ5JSZ5 2229 aaKnown RBP20.19■□□□□ 0.82
COL9A1-210ENST00000493682 SORBS3O60504 671 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 ZNF200P98182 395 aaPredicted RBP20.19■□□□□ 0.82
COL9A1-210ENST00000493682 SLC35G1Q2M3R5 365 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 TRIM71Q2Q1W2 868 aaKnown RBP20.19■□□□□ 0.82
COL9A1-210ENST00000493682 CELF3Q5SZQ8 465 aaKnown RBP20.19■□□□□ 0.82
COL9A1-210ENST00000493682 MYSM1Q5VVJ2 828 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 TRAF7Q6Q0C0 670 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 VSIG10LQ86VR7 867 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 IL31RAQ8NI17 732 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 WNT8BQ93098 351 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 ZBED2Q9BTP6 218 aa20.19■□□□□ 0.82
COL9A1-210ENST00000493682 ABHD14A-ACY1A0A1B0GW23 586 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 RBAK-RBAKDNI3L0D1 243 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 LPXNO60711 386 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 PPFIA4O75335 1185 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 HIC1Q14526 733 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 PGM5Q15124 567 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 HSDL1Q3SXM5 330 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 KCNV1Q6PIU1 500 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 SAMD3Q8N6K7 520 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 SPATA33Q96N06 139 aa20.18■□□□□ 0.82
COL9A1-210ENST00000493682 GGPS1O95749 300 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 SP2Q02086 613 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 GRM4Q14833 912 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 ZNF618Q5T7W0 954 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 HOMER1Q86YM7 354 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 COG5Q9UP83 839 aa20.17■□□□□ 0.82
COL9A1-210ENST00000493682 TCF20Q9UGU0 1960 aaKnown RBP20.17■□□□□ 0.82
COL9A1-210ENST00000493682 GJB5O95377 273 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 TGFB3P10600 412 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 UBA1P22314 1058 aaKnown RBP20.16■□□□□ 0.82
COL9A1-210ENST00000493682 TRDNQ13061 729 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 IKBKEQ14164 716 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 MBTPS1Q14703 1052 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 GPKOWQ92917 476 aaPredicted RBP eCLIP20.16■□□□□ 0.82
COL9A1-210ENST00000493682 ZFP91Q96JP5 570 aaPredicted RBP20.16■□□□□ 0.82
COL9A1-210ENST00000493682 PIGSQ96S52 555 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 RAD9AQ99638 391 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 RIOX1Q9H6W3 641 aa20.16■□□□□ 0.82
COL9A1-210ENST00000493682 MYH7BA7E2Y1 1941 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 GCOM1H8Y6P7 765 aaPredicted RBP20.15■□□□□ 0.82
COL9A1-210ENST00000493682 EFCAB14O75071 495 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 POLR2MP0CAP2 368 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 GSPT1P15170 499 aaKnown RBP20.15■□□□□ 0.82
COL9A1-210ENST00000493682 CCND2P30279 289 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 TRAF1Q13077 416 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 FCHSD1Q86WN1 690 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 GDPD5Q8WTR4 605 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 HLA-CQ95604 372 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 YTHDC1Q96MU7 727 aaKnown RBP20.15■□□□□ 0.82
COL9A1-210ENST00000493682 C16orf70Q9BSU1 422 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 SENP2Q9HC62 589 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 RAPGEFL1Q9UHV5 662 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 COL4A4P53420 1690 aaPredicted RBP20.15■□□□□ 0.82
COL9A1-210ENST00000493682 BDP1A6H8Y1 2624 aa20.15■□□□□ 0.82
COL9A1-210ENST00000493682 IFIT3O14879 490 aaKnown RBP20.14■□□□□ 0.81
COL9A1-210ENST00000493682 CYTH3O43739 400 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 LGR5O75473 907 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 CYP21A2P08686 494 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 PDE4AP27815 886 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 SERINC5Q86VE9 423 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 MLXIPQ9HAP2 919 aa20.14■□□□□ 0.81
COL9A1-210ENST00000493682 PNMA6FA0A0J9YX94 578 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 THPOP40225 353 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 ERVK-21P61565 698 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 PTH1RQ03431 593 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 TTC22Q5TAA0 569 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 FAM117BQ6P1L5 589 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 BCAS3Q9H6U6 928 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 SUGCTQ9HAC7 445 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 LMCD1Q9NZU5 365 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 MTUS1Q9ULD2 1270 aa20.13■□□□□ 0.81
COL9A1-210ENST00000493682 NCOR1O75376 2440 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 EMSYQ7Z589 1322 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 LINC01553A4QN01 128 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 H3BRB1 525 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 CACNB1Q02641 598 aaPredicted RBP20.12■□□□□ 0.81
COL9A1-210ENST00000493682 TROAPQ12815 778 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.12■□□□□ 0.81
COL9A1-210ENST00000493682 TGS1Q96RS0 853 aaKnown RBP20.12■□□□□ 0.81
COL9A1-210ENST00000493682 TUT1Q9H6E5 874 aaKnown RBP20.12■□□□□ 0.81
COL9A1-210ENST00000493682 TAF6LQ9Y6J9 622 aa20.12■□□□□ 0.81
COL9A1-210ENST00000493682 ERICH2A1L162 156 aa20.11■□□□□ 0.81
COL9A1-210ENST00000493682 C17orf102A2RUQ5 167 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms