RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 DDX41Q9UJV9 622 aaKnown RBP16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 ABCB11O95342 1321 aa16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 IRS1P35568 1242 aa16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 HERC4Q5GLZ8 1057 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 GPATCH4Q5T3I0 446 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 CHST3Q7LGC8 479 aa16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 SERINC5Q86VE9 423 aa16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 SYTL5Q8TDW5 730 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 USP34Q70CQ2 3546 aa16.7■□□□□ 0.26
PRPF40A-211ENST00000493468 RSPH10B2B2RC85 870 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 RSPH10BP0C881 870 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 ZNF286BP0CG31 522 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 SMAD2Q15796 467 aaKnown RBP16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 CTC1Q2NKJ3 1217 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 USH1GQ495M9 461 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 TMEM192Q8IY95 271 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 TOP1MTQ969P6 601 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 TAAR1Q96RJ0 339 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 YME1L1Q96TA2 773 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 RMDN3Q96TC7 470 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 COL20A1Q9P218 1284 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 ZMYM6O95789 1325 aa16.69■□□□□ 0.26
PRPF40A-211ENST00000493468 CAND2O75155 1236 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 PPFIA4O75335 1185 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 EIF3JO75822 258 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 PCP11498 1178 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 HOXC8P31273 242 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 LTBRP36941 435 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 VPS53Q5VIR6 699 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 RPAINQ86UA6 219 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 MCF2L2Q86YR7 1114 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 DHX37Q8IY37 1157 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 LMAN2LQ9H0V9 348 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 TOMM22Q9NS69 142 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 CLDND1Q9NY35 253 aa16.68■□□□□ 0.26
PRPF40A-211ENST00000493468 C5orf67F2Z3F1 127 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 THPOP40225 353 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 ZNF200P98182 395 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 HIC1Q14526 733 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 CDC37Q16543 378 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 RRP12Q5JTH9 1297 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 BMP8AQ7Z5Y6 402 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 SEPT8Q92599 483 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 MRVI1Q9Y6F6 885 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 KMT2EQ8IZD2 1858 aa16.67■□□□□ 0.26
PRPF40A-211ENST00000493468 PKN1Q16512 942 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 ARHGEF16Q5VV41 709 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 KCNV1Q6PIU1 500 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 EP400NLQ6ZTU2 488 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 TBC1D5Q92609 795 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 PRRX2Q99811 253 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 LAMA4Q16363 1823 aa16.66■□□□□ 0.26
PRPF40A-211ENST00000493468 MBTPS2O43462 519 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 RB1P06400 928 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 NR3C2P08235 984 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 PTPN5P54829 565 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 GHRHRQ02643 423 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 SMAD4Q13485 552 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 MYSM1Q5VVJ2 828 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 EDAQ92838 391 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 APBB2Q92870 758 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 C11orf84Q9BUA3 381 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 PXMP2Q9NR77 195 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 HELLSQ9NRZ9 838 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 MUTYHQ9UIF7 546 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 RWDD3Q9Y3V2 267 aa16.65■□□□□ 0.26
PRPF40A-211ENST00000493468 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 C17orf102A2RUQ5 167 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 ST18O60284 1047 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 FGAP02671 866 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 EIF2AK2P19525 551 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 NT5C2P49902 561 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 HSDL1Q3SXM5 330 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 CELF3Q5SZQ8 465 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 RNF135Q8IUD6 432 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 MIER1Q8N108 512 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 PRSS33Q8NF86 280 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 ANKS1AQ92625 1134 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 C16orf70Q9BSU1 422 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 IFIH1Q9BYX4 1025 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 MRPL11Q9Y3B7 192 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 ZDBF2Q9HCK1 2354 aa16.64■□□□□ 0.25
PRPF40A-211ENST00000493468 CFAP54Q96N23 3096 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 RGS20O76081 388 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 LINC00271P0C7V0 271 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 GOLGA8HP0CJ92 632 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 HSPD1P10809 573 aaKnown RBP16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 MX1P20591 662 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 CTNNB1P35222 781 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 HYAL1Q12794 435 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 DGKHQ86XP1 1220 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 TICAM2Q86XR7 235 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 ATP6V0A1Q93050 837 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 SPATA33Q96N06 139 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 UBA5Q9GZZ9 404 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 CACNA1HO95180 2353 aa16.63■□□□□ 0.25
PRPF40A-211ENST00000493468 UPP2O95045 317 aa16.62■□□□□ 0.25
PRPF40A-211ENST00000493468 TGFB3P10600 412 aa16.62■□□□□ 0.25
PRPF40A-211ENST00000493468 HSD17B4P51659 736 aa16.62■□□□□ 0.25
PRPF40A-211ENST00000493468 DLX2Q07687 328 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms