RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 MAPRE3Q9UPY8 281 aa4.72□□□□□ -1.65
BRCA1-220ENST00000492859 KCNH4Q9UQ05 1017 aa4.72□□□□□ -1.65
BRCA1-220ENST00000492859 MAPK8IP1Q9UQF2 711 aa4.72□□□□□ -1.65
BRCA1-220ENST00000492859 SSX2IPQ9Y2D8 614 aa4.72□□□□□ -1.65
BRCA1-220ENST00000492859 RRN3P2A6NIE6 340 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 A8MVJ9 347 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 H3BRJ5 948 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 NDC80O14777 642 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 SLC7A4O43246 635 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 CTNND1O60716 968 aaKnown RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 SOCS5O75159 536 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 MAFO75444 373 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 MICAL2O94851 1124 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 GOSR1O95249 250 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 THEGLP0DJG4 465 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 S100A5P33763 92 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 GNL1P36915 607 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 ZAP70P43403 619 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 NUCB2P80303 420 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 RELQ04864 619 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 ITIH3Q06033 890 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 TRIM28Q13263 835 aaKnown RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 SEPT6Q14141 434 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 PDIA5Q14554 519 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 MEA1Q16626 185 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 CLPPQ16740 277 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 IMMTQ16891 758 aaKnown RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 C5orf22Q49AR2 442 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 ARHGAP29Q52LW3 1261 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 BOLA3Q53S33 107 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 RNF20Q5VTR2 975 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 HHATQ5VTY9 493 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 ALKBH5Q6P6C2 394 aaKnown RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 DNAJB7Q7Z6W7 309 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 EFCAB13Q8IY85 973 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 COLGALT2Q8IYK4 626 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 MYCT1Q8N699 235 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 FAM169BQ8N8A8 192 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 GOLGA5Q8TBA6 731 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 ACMSDQ8TDX5 336 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 OTUD7AQ8TE49 926 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 TEKT4Q8WW24 435 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 CENPIQ92674 756 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 TTC17Q96AE7 1141 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 CLIP3Q96DZ5 547 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 EAF1Q96JC9 268 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 SGCZQ96LD1 299 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 UBXN10Q96LJ8 280 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 MFSD14AQ96MC6 490 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 TARS2Q9BW92 718 aaKnown RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 SLC6A16Q9GZN6 736 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 KIAA1683Q9H0B3 1180 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 BRD9Q9H8M2 597 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 PLSCR4Q9NRQ2 329 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 VPS45Q9NRW7 570 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 KBTBD4Q9NVX7 518 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 DACT1Q9NYF0 836 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 IFT80Q9P2H3 777 aaPredicted RBP4.71□□□□□ -1.66
BRCA1-220ENST00000492859 STK39Q9UEW8 545 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 HPCAL4Q9UM19 191 aa4.71□□□□□ -1.66
BRCA1-220ENST00000492859 B4E171 279 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 H7C0S8 307 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 AP3B1O00203 1094 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 STX6O43752 255 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 ZBED4O75132 1171 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 EPN2O95208 641 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 EEF2P13639 858 aaKnown RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 PRLRP16471 622 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 TRIM21P19474 475 aaKnown RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 EIF4BP23588 611 aaKnown RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 ELF1P32519 619 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 SLC19A1P41440 591 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 NPTX2P47972 431 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 KCNJ6P48051 423 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 RPIAP49247 311 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 CTCFP49711 727 aaPredicted RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 CLCN2P51788 898 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 KLHL30Q0D2K2 578 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 STRN3Q13033 797 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 PPFIA1Q13136 1202 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 SGCGQ13326 291 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 INAQ16352 499 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 KRTCAP3Q53RY4 240 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 FAM205BPQ63HN1 556 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 TLDC1Q6P9B6 456 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 ARHGAP27Q6ZUM4 889 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 NUP54Q7Z3B4 507 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 CCDC84Q86UT8 332 aaPredicted RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 MAP4K3Q8IVH8 894 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 LRRC71Q8N4P6 559 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 AADATQ8N5Z0 425 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 FAM76AQ8TAV0 307 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 CPLX3Q8WVH0 158 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 CTNNBL1Q8WYA6 563 aaPredicted RBP4.7□□□□□ -1.66
BRCA1-220ENST00000492859 FATE1Q969F0 183 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 LRRC45Q96CN5 670 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 EPSTI1Q96J88 318 aa4.7□□□□□ -1.66
BRCA1-220ENST00000492859 TIGD1Q96MW7 591 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms