RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 SPATA32Q96LK8 384 aa7.24□□□□□ -1.25
SCN1A-206ENST00000491429 MENTQ9BUN1 341 aa7.24□□□□□ -1.25
SCN1A-206ENST00000491429 TMEM168Q9H0V1 697 aa7.24□□□□□ -1.25
SCN1A-206ENST00000491429 NGRNQ9NPE2 291 aaKnown RBP7.24□□□□□ -1.25
SCN1A-206ENST00000491429 NOP56O00567 594 aaKnown RBP7.23□□□□□ -1.25
SCN1A-206ENST00000491429 AMHP03971 560 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 KBTBD2Q8IY47 623 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 ARRDC4Q8NCT1 418 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 ZCCHC14Q8WYQ9 949 aaKnown RBP7.23□□□□□ -1.25
SCN1A-206ENST00000491429 WWC2-AS2Q96NR7 200 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 CDK5RAP1Q96SZ6 601 aaKnown RBP7.23□□□□□ -1.25
SCN1A-206ENST00000491429 CROTQ9UKG9 612 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 ZNF652Q9Y2D9 606 aa7.23□□□□□ -1.25
SCN1A-206ENST00000491429 TBX1O43435 398 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 FZD7O75084 574 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 NASPP49321 788 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-206ENST00000491429 EPHB4P54760 987 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 PPP2CBP62714 309 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 PPP2CAP67775 309 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 IQCEQ6IPM2 695 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 BTN2A2Q8WVV5 523 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 TOE1Q96GM8 510 aaKnown RBP7.22□□□□□ -1.25
SCN1A-206ENST00000491429 CLIC6Q96NY7 704 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 DEF6Q9H4E7 631 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 DTLQ9NZJ0 730 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 WASF3Q9UPY6 502 aa7.22□□□□□ -1.25
SCN1A-206ENST00000491429 R3HDM1Q15032 1099 aaKnown RBP7.21□□□□□ -1.26
SCN1A-206ENST00000491429 TEPPQ6URK8 271 aa7.21□□□□□ -1.26
SCN1A-206ENST00000491429 ARHGEF18Q6ZSZ5 1173 aa7.21□□□□□ -1.26
SCN1A-206ENST00000491429 METTL16Q86W50 562 aaKnown RBP7.21□□□□□ -1.26
SCN1A-206ENST00000491429 DIO2Q92813 273 aa7.21□□□□□ -1.26
SCN1A-206ENST00000491429 TMEM169Q96HH4 297 aa7.21□□□□□ -1.26
SCN1A-206ENST00000491429 JADE2Q9NQC1 790 aa7.21□□□□□ -1.26
SCN1A-206ENST00000491429 TCRBV5S2A0A599 114 aa7.2□□□□□ -1.26
SCN1A-206ENST00000491429 HGSO14964 777 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-206ENST00000491429 RECKO95980 971 aa7.2□□□□□ -1.26
SCN1A-206ENST00000491429 ZNF143P52747 638 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-206ENST00000491429 E4F1Q66K89 784 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-206ENST00000491429 CPLX3Q8WVH0 158 aa7.2□□□□□ -1.26
SCN1A-206ENST00000491429 COA3Q9Y2R0 106 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-206ENST00000491429 PCDHB4Q9Y5E5 795 aa7.2□□□□□ -1.26
SCN1A-206ENST00000491429 PATE3B3GLJ2 98 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 B4GALT4O60513 344 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 LRG1P02750 347 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 ECI1P42126 302 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 SPDYAQ5MJ70 313 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 STEAP3Q658P3 488 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 RCBTB1Q8NDN9 531 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 PCED1AQ9H1Q7 454 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 MEGF9Q9H1U4 602 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 RBPJLQ9UBG7 517 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 HS3ST3A1Q9Y663 406 aa7.19□□□□□ -1.26
SCN1A-206ENST00000491429 SCAMP3O14828 347 aaKnown RBP7.18□□□□□ -1.26
SCN1A-206ENST00000491429 MEFVO15553 781 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-206ENST00000491429 MYO1BO43795 1136 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 TADA3O75528 432 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 NAT2P11245 290 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 SELENOPP49908 381 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 GTF2A2P52657 109 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 KLF10Q13118 480 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 KCNAB2Q13303 367 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 PRSS53Q2L4Q9 553 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 SLFN13Q68D06 897 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 TRMT10BQ6PF06 316 aaKnown RBP7.18□□□□□ -1.26
SCN1A-206ENST00000491429 TMC5Q6UXY8 1006 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 USP51Q70EK9 711 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 KLHL36Q8N4N3 616 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 KREMEN2Q8NCW0 462 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 SLITRK6Q9H5Y7 841 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 FTSJ1Q9UET6 329 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 ZDHHC9Q9Y397 364 aa7.18□□□□□ -1.26
SCN1A-206ENST00000491429 SNRPB2P08579 225 aaKnown RBP7.17□□□□□ -1.26
SCN1A-206ENST00000491429 LCP1P13796 627 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 GJA8P48165 433 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 NFATC3Q12968 1075 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 SF1Q15637 639 aaKnown RBP7.17□□□□□ -1.26
SCN1A-206ENST00000491429 CHRNA2Q15822 529 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 CRB2Q5IJ48 1285 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 TMEM209Q96SK2 561 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 ING1Q9UK53 422 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-206ENST00000491429 TCAF1Q9Y4C2 921 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 PCDHA2Q9Y5H9 948 aa7.17□□□□□ -1.26
SCN1A-206ENST00000491429 MUSKO15146 869 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 ZNF623O75123 536 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 CYP7B1O75881 506 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 COL6A1P12109 1028 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 NCAPHQ15003 741 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 EMC4Q5J8M3 183 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 PHF19Q5T6S3 580 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 Q8TCH9 128 aa7.16□□□□□ -1.26
SCN1A-206ENST00000491429 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-206ENST00000491429 H7BY64 318 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 SCG5P05408 212 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 ITGAVP06756 1048 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 HOXC12P31275 282 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 ZNF227Q86WZ6 799 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 NUDT10Q8NFP7 164 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.15□□□□□ -1.26
SCN1A-206ENST00000491429 ANAPC16Q96DE5 110 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 NUDT11Q96G61 164 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms