RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	SPATA25	Q9BR10	227 aa		7.43	□□□□□ -1.22
PTPN4-212	ENST00000488896	CCDC113	Q9H0I3	377 aa		7.43	□□□□□ -1.22
PTPN4-212	ENST00000488896	KCNC1	P48547	511 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	FAM209A	Q5JX71	171 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	LIPI	Q6XZB0	460 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	SAPCD2	Q86UD0	394 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	ZC3H18	Q86VM9	953 aa	Known RBP	7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	MIB1	Q86YT6	1006 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	FAM126B	Q8IXS8	530 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	PIP4K2C	Q8TBX8	421 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	C20orf173	Q96LM9	149 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	XYLT2	Q9H1B5	865 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	CDIP1	Q9H305	208 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	TRAF6	Q9Y4K3	522 aa		7.42	□□□□□ -1.22
PTPN4-212	ENST00000488896	FAM221B	A6H8Z2	402 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	SMARCA5	O60264	1052 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	ADCY3	O60266	1144 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	COL6A2	P12110	1019 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	FOXB2	Q5VYV0	432 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	RSPO2	Q6UXX9	243 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	LBX2	Q6XYB7	198 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	RBM12B	Q8IXT5	1001 aa	Known RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	ZNF669	Q96BR6	464 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	IPO9	Q96P70	1041 aa	Known RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	LUC7L	Q9NQ29	371 aa	Known RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	SPATA6	Q9NWH7	488 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	MYOT	Q9UBF9	498 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	ZNF652	Q9Y2D9	606 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	KDM2B	Q8NHM5	1336 aa		7.41	□□□□□ -1.22
PTPN4-212	ENST00000488896	TRBV23-1	A0A0A0MS06	115 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896		A0A0G2JLL6	359 aa	Predicted RBP	7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	TCRBV5S2	A0A599	114 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	KRIT1	O00522	736 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	TADA3	O75528	432 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	FAM153B	P0C7A2	387 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	GRK2	P25098	689 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	GRK3	P35626	688 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	NKX3-2	P78367	333 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	DLX2	Q07687	328 aa	Predicted RBP	7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	IFNL3	Q8IZI9	196 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	DEPDC7	Q96QD5	511 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	C11orf84	Q9BUA3	381 aa	Predicted RBP	7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	ADAM7	Q9H2U9	754 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	ASXL2	Q76L83	1435 aa		7.4	□□□□□ -1.22
PTPN4-212	ENST00000488896	ADAMTS20	P59510	1910 aa		7.4	□□□□□ -1.23
PTPN4-212	ENST00000488896	SLC27A2	O14975	620 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	GPR85	P60893	370 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	CAP1	Q01518	475 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	GRIN1	Q05586	938 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	RBL2	Q08999	1139 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	SERINC3	Q13530	473 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	KIZ	Q2M2Z5	673 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	CR1L	Q2VPA4	569 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	EMC4	Q5J8M3	183 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	STYK1	Q6J9G0	422 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	TTLL7	Q6ZT98	887 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	SCUBE1	Q8IWY4	988 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	CARF	Q8N187	725 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	TOE1	Q96GM8	510 aa	Known RBP	7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	SRPK1	Q96SB4	655 aa	Known RBP	7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	DNAJC2	Q99543	621 aa	Known RBP	7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	SNTG2	Q9NY99	539 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	NTM	Q9P121	344 aa		7.39	□□□□□ -1.23
PTPN4-212	ENST00000488896	SH3D21	A4FU49	640 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	SOD2	P04179	222 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	GNAT1	P11488	350 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	SARS	P49591	514 aa	Known RBP	7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	RASA3	Q14644	834 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	SF3A1	Q15459	793 aa	Known RBP	7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	LCE1D	Q5T752	114 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	NT5DC1	Q5TFE4	455 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	LINC00482	Q8N8I6	264 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	KY	Q8NBH2	561 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	ARMC5	Q96C12	935 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	ZSWIM3	Q96MP5	696 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	ZFYVE21	Q9BQ24	234 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	SMOC1	Q9H4F8	434 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	SLC6A20	Q9NP91	592 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	USP40	Q9NVE5	1235 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	DTL	Q9NZJ0	730 aa		7.38	□□□□□ -1.23
PTPN4-212	ENST00000488896	MAFK	O60675	156 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	THBS2	P35442	1172 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	ITGA1	P56199	1179 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	NFIX	Q14938	502 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	DPH6	Q7L8W6	267 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	OTOP3	Q7RTS5	596 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	MTDH	Q86UE4	582 aa	Known RBP	7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	RELT	Q969Z4	430 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	EXOC2	Q96KP1	924 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	DNAJC7	Q99615	494 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	ALG1	Q9BT22	464 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	IPPK	Q9H8X2	491 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	RAPGEFL1	Q9UHV5	662 aa		7.37	□□□□□ -1.23
PTPN4-212	ENST00000488896	NKRF	O15226	690 aa	Known RBP eCLIP	7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	LTF	P02788	710 aa		7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	SUMO1	P63165	101 aa	Known RBP	7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	SPIRE1	Q08AE8	756 aa		7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	TEPP	Q6URK8	271 aa		7.36	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms