RNA–Protein interactions for RNA: ENST00000482507.5

ATG4B-220, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4B, Length 2,414 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-220ENST00000482507 CLEC10AQ8IUN9 316 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 EHBP1Q8NDI1 1231 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 CALML4Q96GE6 196 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 NDST4Q9H3R1 872 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 MLXIPQ9HAP2 919 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 PLAGL2Q9UPG8 496 aa16.53■□□□□ 0.24
ATG4B-220ENST00000482507 PDHBP11177 359 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 IDEP14735 1019 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 HNRNPH3P31942 346 aaKnown RBP16.52■□□□□ 0.24
ATG4B-220ENST00000482507 AMPD3Q01432 767 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 ATP2B2Q01814 1243 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 CALCRLQ16602 461 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 HINFPQ9BQA5 517 aa16.52■□□□□ 0.24
ATG4B-220ENST00000482507 ESYT2A0FGR8 921 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 SYF2O95926 243 aaKnown RBP16.51■□□□□ 0.23
ATG4B-220ENST00000482507 C2orf54Q08AI8 447 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 FKBP15Q5T1M5 1219 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 UNC13DQ70J99 1090 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 CCDC42Q96M95 316 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 ZNF287Q9HBT7 754 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 HPCAL4Q9UM19 191 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 SHTN1A0MZ66 631 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 ANO9A1A5B4 782 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 FXR2P51116 673 aaKnown RBP eCLIP16.51■□□□□ 0.23
ATG4B-220ENST00000482507 CACNB3P54284 484 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 LRRC41Q15345 812 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 ECM1Q16610 540 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 LRRC55Q6ZSA7 311 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 CCDC155Q8N6L0 562 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 FAM71BQ8TC56 605 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 LARP4BQ92615 738 aaKnown RBP16.51■□□□□ 0.23
ATG4B-220ENST00000482507 SECISBP2LQ93073 1101 aaKnown RBP16.51■□□□□ 0.23
ATG4B-220ENST00000482507 GJA10Q969M2 543 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 JADE2Q9NQC1 790 aa16.51■□□□□ 0.23
ATG4B-220ENST00000482507 SMARCA1P28370 1054 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 ACTN2P35609 894 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 EIF4A3P38919 411 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 KIF5AQ12840 1032 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 CCDC96Q2M329 555 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 CREG2Q8IUH2 290 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 LRRC47Q8N1G4 583 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 GOLGA5Q8TBA6 731 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 COG1Q8WTW3 980 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 PCDHA13Q9Y5I0 950 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 TARSL2A2RTX5 802 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 IPO7O95373 1038 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 MOCS3O95396 460 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 PPP1R2P41236 205 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 TNNT3P45378 269 aaPredicted RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 CRKP46108 304 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 AARSP49588 968 aaKnown RBP eCLIP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 KIF11P52732 1056 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 EIF6P56537 245 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 EHHADHQ08426 723 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 RIN2Q8WYP3 895 aaPredicted RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 IFIH1Q9BYX4 1025 aaKnown RBP16.5■□□□□ 0.23
ATG4B-220ENST00000482507 SH2D4AQ9H788 454 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 LCMT1Q9UIC8 334 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 SALL4Q9UJQ4 1053 aa16.5■□□□□ 0.23
ATG4B-220ENST00000482507 PVALEFA0A1B0GWK0 134 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 LRRC53A6NM62 1247 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 PPP1R11O60927 126 aaPredicted RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 VIL1P09327 827 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 CKAP4Q07065 602 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 PICALMQ13492 652 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 APOBEC3HQ6NTF7 200 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 RSBN1LQ6PCB5 846 aaPredicted RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 FOXR1Q6PIV2 292 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 GUF1Q8N442 669 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 CAGE1Q8TC20 777 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 HDAC7Q8WUI4 952 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 BAP1Q92560 729 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 RAD54LQ92698 747 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 DRC1Q96MC2 740 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 MMRN2Q9H8L6 949 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 VIPAS39Q9H9C1 493 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 STK17AQ9UEE5 414 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 SNX12Q9UMY4 172 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 BRCA1P38398 1863 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 PRPF6O94906 941 aaKnown RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 SPA17Q15506 151 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 MAN2A1Q16706 1144 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 UBE2SQ16763 222 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 DDX12PQ92771 950 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 TEKT1Q969V4 418 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 FAM163AQ96GL9 167 aaPredicted RBP16.49■□□□□ 0.23
ATG4B-220ENST00000482507 FAM204AQ9H8W3 233 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 USP40Q9NVE5 1235 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 MTMR4Q9NYA4 1195 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 SMARCAL1Q9NZC9 954 aa16.49■□□□□ 0.23
ATG4B-220ENST00000482507 GAKO14976 1311 aa16.48■□□□□ 0.23
ATG4B-220ENST00000482507 RNF40O75150 1001 aa16.48■□□□□ 0.23
ATG4B-220ENST00000482507 ADCY7P51828 1080 aa16.48■□□□□ 0.23
ATG4B-220ENST00000482507 MRPS25P82663 173 aaKnown RBP16.48■□□□□ 0.23
ATG4B-220ENST00000482507 ORC2Q13416 577 aaPredicted RBP16.48■□□□□ 0.23
ATG4B-220ENST00000482507 HSP90B2PQ58FF3 399 aa16.48■□□□□ 0.23
ATG4B-220ENST00000482507 CCNI2Q6ZMN8 369 aaPredicted RBP16.48■□□□□ 0.23
ATG4B-220ENST00000482507 RRAGAQ7L523 313 aa16.48■□□□□ 0.23
ATG4B-220ENST00000482507 RPGRIP1Q96KN7 1286 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms