RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	CHGB	P05060	677 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	PFKM	P08237	780 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	C6orf222	P0C671	652 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	RAG1	P15918	1043 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	CPT1A	P50416	773 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	TLE2	Q04725	743 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	TRAF1	Q13077	416 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	FSCN1	Q16658	493 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCDC144B	Q3MJ40	725 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	ASPRV1	Q53RT3	343 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	AKNAD1	Q5T1N1	836 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	ANKRD45	Q5TZF3	282 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	SYDE2	Q5VT97	1194 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	MFSD6	Q6ZSS7	791 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	CPXCR1	Q8N123	301 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	KLHDC9	Q8NEP7	349 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	DNER	Q8NFT8	737 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	MORC4	Q8TE76	937 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	RNPC3	Q96LT9	517 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	FGD4	Q96M96	766 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	ARHGAP9	Q9BRR9	750 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	RAVER2	Q9HCJ3	691 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	TOMM22	Q9NS69	142 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	HOMER2	Q9NSB8	354 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	MTMR10	Q9NXD2	777 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	CYP39A1	Q9NYL5	469 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	CTNNA3	Q9UI47	895 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	TBX21	Q9UL17	535 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	PRR12	Q9ULL5	1215 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	COL4A4	P53420	1690 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	COL4A6	Q14031	1691 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	SI	P14410	1827 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	RALGAPA2	Q2PPJ7	1873 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	SMIM22	K7EJ46	135 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ARVCF	O00192	962 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	KPNA6	O60684	536 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZIC2	O95409	532 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SNAI1	O95863	264 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	TIMP1	P01033	207 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ASGR1	P07306	291 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SNHG28	P0DPA3	235 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	HSPD1	P10809	573 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	PDHB	P11177	359 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ALAS1	P13196	640 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	BMP1	P13497	986 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ALDH5A1	P51649	535 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	TNFAIP2	Q03169	654 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	PTK2	Q05397	1052 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZNF543	Q08ER8	600 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	PPP2R5B	Q15173	497 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	RAB30	Q15771	203 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	IMMT	Q16891	758 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	IQSEC1	Q6DN90	963 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	MFSD5	Q6N075	450 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	MRPL14	Q6P1L8	145 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	VASH1	Q7L8A9	365 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZBTB33	Q86T24	672 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	DGKH	Q86XP1	1220 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	FAM126B	Q8IXS8	530 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCDC144CP	Q8IYA2	1237 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	TMEM199	Q8N511	208 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SAMD3	Q8N6K7	520 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCDC155	Q8N6L0	562 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SLC17A8	Q8NDX2	589 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	RGS22	Q8NE09	1264 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	OTUD7A	Q8TE49	926 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SCFD2	Q8WU76	684 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ITPKC	Q96DU7	683 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZFP42	Q96MM3	310 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	TRERF1	Q96PN7	1200 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	CRBN	Q96SW2	442 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SEC62	Q99442	399 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	DSCC1	Q9BVC3	393 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	KRT23	Q9C075	422 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	KATNBL1	Q9H079	304 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	AP5M1	Q9H0R1	490 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	TMEM39A	Q9NV64	488 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	CDV3	Q9UKY7	258 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	GNE	Q9Y223	722 aa	Known RBP	4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	RIPK3	Q9Y572	518 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZNF536	O15090	1300 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	ABCB11	O95342	1321 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	SCN5A	Q14524	2016 aa		4.85	□□□□□ -1.63
VPS13D-208	ENST00000481484	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	TET1	Q8NFU7	2136 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	NLRC5	Q86WI3	1866 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	NEDD4	P46934	1319 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	TRIM43B	A6NCK2	446 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	PARN	O95453	639 aa	Known RBP	4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	FGA	P02671	866 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	SUPT20HL2	P0C7V6	817 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	TAL1	P17542	331 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	MCC	P23508	829 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	EDNRB	P24530	442 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	RFC2	P35250	354 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	NUCB1	Q02818	461 aa		4.84	□□□□□ -1.63
VPS13D-208	ENST00000481484	PTPN11	Q06124	597 aa	Predicted RBP	4.84	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms