RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 GEMIN8Q9NWZ8 242 aaKnown RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 PCDH10Q9P2E7 1040 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 DDX41Q9UJV9 622 aaKnown RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 LCTP09848 1927 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 SMCHD1A6NHR9 2005 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 PIK3CDO00329 1044 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 SOX1O00570 391 aaPredicted RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 SUPT20HL2P0C7V6 817 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 ITGB8P26012 769 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 PSMA5P28066 241 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 PSMC6P62333 389 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 LAMC2Q13753 1193 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 RTN1Q16799 776 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 LY6KQ17RY6 165 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 GNPTABQ3T906 1256 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 MFSD5Q6N075 450 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 BLOC1S2Q6QNY1 142 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 MTERF4Q7Z6M4 381 aaKnown RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 RAB11FIP4Q86YS3 637 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 CMTR1Q8N1G2 835 aaKnown RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 EMID1Q96A84 441 aaPredicted RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 TCEANC2Q96MN5 208 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 JAKMIP1Q96N16 626 aaKnown RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 GRIN2DO15399 1336 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 KLF18A0A0U1RQI7 1052 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 TGFB3P10600 412 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 PTPN11Q06124 597 aaPredicted RBP13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 ARHGAP1Q07960 439 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 FRMPD4Q14CM0 1322 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 XRRA1Q6P2D8 792 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 CCDC82Q8N4S0 544 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 TMEM199Q8N511 208 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 AFG1LQ8WV93 481 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 LRCH3Q96II8 777 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 ALDH8A1Q9H2A2 487 aaPredicted RBP13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 FARP1Q9Y4F1 1045 aaPredicted RBP13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 SNX14Q9Y5W7 946 aa13.22□□□□□ -0.29
HLA-DOB-208ENST00000475235 MCM3APO60318 1980 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 CCDC196A0A1B0GTZ2 297 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 GOLGA8AA7E2F4 631 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 GOLGA8BA8MQT2 603 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 MMP3P08254 477 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 CASTP20810 708 aaKnown RBP13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 PPIGQ13427 754 aaKnown RBP eCLIP13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 SHHQ15465 462 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 DGKDQ16760 1214 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 NFRKBQ6P4R8 1299 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 FBXL16Q8N461 479 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 PSTPIP2Q9H939 334 aa13.21□□□□□ -0.29
HLA-DOB-208ENST00000475235 hCG_1984214I3L0E3 225 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 MEIS2O14770 477 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 B4GALT4O60513 344 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 RGS20O76081 388 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 USP17L6PQ6QN14 398 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 TSHZ1Q6ZSZ6 1077 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 HEATR3Q7Z4Q2 680 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 ZNF713Q8N859 430 aaPredicted RBP13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 IL31RAQ8NI17 732 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 PPTC7Q8NI37 304 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 KATNAL1Q9BW62 490 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 PPP1R12CQ9BZL4 782 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 HIPK3Q9H422 1215 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 SH3BP1Q9Y3L3 701 aa13.2□□□□□ -0.3
HLA-DOB-208ENST00000475235 LTBP2Q14767 1821 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 CNTNAP5Q8WYK1 1306 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 NRDCO43847 1150 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 RPS6KB1P23443 525 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 METAP2P50579 478 aaKnown RBP eCLIP13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 C9orf50Q5SZB4 431 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 PCNX4Q63HM2 1172 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 PPP1R18Q6NYC8 613 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 Q6ZUG5 572 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 INPP4AQ96PE3 977 aaPredicted RBP13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 TRPV6Q9H1D0 765 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 TRIOBPQ9H2D6 2365 aa13.19□□□□□ -0.3
HLA-DOB-208ENST00000475235 hCG_1642624A0A1W2PR95 340 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 SPDYE3A6NKU9 549 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 FIBPO43427 364 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 PPFIA4O75335 1185 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 GGPS1O95749 300 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 UBA1P22314 1058 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 ICAM3P32942 547 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 MRPS9P82933 396 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NEDD9Q14511 834 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 CELF3Q5SZQ8 465 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 MYSM1Q5VVJ2 828 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 PSRC1Q6PGN9 363 aaPredicted RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NLRX1Q86UT6 975 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 KCTD17Q8N5Z5 321 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 BRF1Q92994 677 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 RNPC3Q96LT9 517 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NOC4LQ9BVI4 516 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 GLT8D2Q9H1C3 349 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 EHMT1Q9H9B1 1298 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 MLXIPQ9HAP2 919 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 LAMA3Q16787 3333 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 CPA1P15085 419 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 CSF2RAP15509 400 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 CYP2C18P33260 490 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms