RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 GDF6Q6KF10 455 aaPredicted RBP23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 AFAP1L1Q8TED9 768 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 VWCEQ96DN2 955 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 SPATA33Q96N06 139 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 SLC28A3Q9HAS3 691 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 GTF2IRD1Q9UHL9 959 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 FRMPD4Q14CM0 1322 aa23.5■■□□□ 1.35
PDLIM4-206ENST00000474421 PARNO95453 639 aaKnown RBP23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 ATP2A2P16615 1042 aaKnown RBP23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 UBA1P22314 1058 aaKnown RBP23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 MFSD10Q14728 455 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 SMARCC2Q8TAQ2 1214 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 GAS2L1Q99501 681 aaPredicted RBP23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 MLXIPQ9HAP2 919 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 PCDHA11Q9Y5I1 949 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 SLC12A7Q9Y666 1083 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 PRUNE2Q8WUY3 3088 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 CUL9Q8IWT3 2517 aa23.49■■□□□ 1.35
PDLIM4-206ENST00000474421 HAS3O00219 553 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 PIK3CDO00329 1044 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 ZNF286BP0CG31 522 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 KIAA0753Q2KHM9 967 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 XRRA1Q6P2D8 792 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 ALG1Q9BT22 464 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 FTOQ9C0B1 505 aaKnown RBP eCLIP23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 HDAC6Q9UBN7 1215 aa23.48■■□□□ 1.35
PDLIM4-206ENST00000474421 ICAM3P32942 547 aa23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 RBL2Q08999 1139 aa23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 HSDL1Q3SXM5 330 aa23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 SRBD1Q8N5C6 995 aaKnown RBP23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 INPP4AQ96PE3 977 aaPredicted RBP23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 SLC9A7Q96T83 725 aa23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 NKX2-4Q9H2Z4 354 aa23.47■■□□□ 1.35
PDLIM4-206ENST00000474421 BAIAP3O94812 1187 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 SELPP16109 830 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 SP2Q02086 613 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 NEDD9Q14511 834 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 CHD9Q3L8U1 2897 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 SYNE3Q6ZMZ3 975 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 SGMS1Q86VZ5 419 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 PHOSPHO2Q8TCD6 241 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 CTAGE1Q96RT6 745 aa23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 YBX2Q9Y2T7 364 aaKnown RBP23.46■■□□□ 1.35
PDLIM4-206ENST00000474421 NOP56O00567 594 aaKnown RBP23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 FIBPO43427 364 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 PLEKHA8P1O95397 391 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 MRPS9P82933 396 aaKnown RBP23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 PTK7Q13308 1070 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 PCNX4Q63HM2 1172 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 LRRC8DQ7L1W4 858 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 FANCBQ8NB91 859 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 TET1Q8NFU7 2136 aa23.45■■□□□ 1.34
PDLIM4-206ENST00000474421 SPATA31C2B4DYI2 1134 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 SORBS3O60504 671 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 RABGGTBP53611 331 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 USP17L6PQ6QN14 398 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 METTL7BQ6UX53 244 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 GPKOWQ92917 476 aaPredicted RBP eCLIP23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 ZFP91Q96JP5 570 aaPredicted RBP23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 PRDM12Q9H4Q4 367 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 PSTPIP2Q9H939 334 aa23.44■■□□□ 1.34
PDLIM4-206ENST00000474421 MEIS2O14770 477 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 CDC45O75419 566 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 CKBP12277 381 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 RXRAP19793 462 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 PPP2R2DQ66LE6 453 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 TMTC3Q6ZXV5 915 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 DHX38Q92620 1227 aaKnown RBP23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 NEK1Q96PY6 1258 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 C16orf70Q9BSU1 422 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 USP26Q9BXU7 913 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 LRRC2Q9BYS8 371 aa23.43■■□□□ 1.34
PDLIM4-206ENST00000474421 KIF28PB7ZC32 967 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 H3BRB1 525 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 KRT32Q14532 448 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 NLRX1Q86UT6 975 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 MICU3Q86XE3 530 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 CMTR1Q8N1G2 835 aaKnown RBP23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 GIMAP8Q8ND71 665 aaPredicted RBP23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 SENP7Q9BQF6 1050 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 TUT1Q9H6E5 874 aaKnown RBP23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 RBM28Q9NW13 759 aaKnown RBP23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 RTEL1Q9NZ71 1219 aa23.42■■□□□ 1.34
PDLIM4-206ENST00000474421 KCNJ6P48051 423 aa23.41■■□□□ 1.34
PDLIM4-206ENST00000474421 COL9A3Q14050 684 aaPredicted RBP23.41■■□□□ 1.34
PDLIM4-206ENST00000474421 TSGA10IPQ3SY00 556 aa23.41■■□□□ 1.34
PDLIM4-206ENST00000474421 CDHR1Q96JP9 859 aa23.41■■□□□ 1.34
PDLIM4-206ENST00000474421 CHD7Q9P2D1 2997 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 CXCL10P02778 98 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 LGALS2P05162 132 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 CNKSR3Q6P9H4 555 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 CYFIP1Q7L576 1253 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 DHX32Q7L7V1 743 aaKnown RBP23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 HERC6Q8IVU3 1022 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 TEX2Q8IWB9 1127 aa23.4■■□□□ 1.34
PDLIM4-206ENST00000474421 C17orf102A2RUQ5 167 aa23.39■■□□□ 1.33
PDLIM4-206ENST00000474421 SPDYE3A6NKU9 549 aa23.39■■□□□ 1.33
PDLIM4-206ENST00000474421 EFCAB14O75071 495 aa23.39■■□□□ 1.33
PDLIM4-206ENST00000474421 HMGB1P09429 215 aaKnown RBP23.39■■□□□ 1.33
PDLIM4-206ENST00000474421 MYOGP15173 224 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms