RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 LRRC8DQ7L1W4 858 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 FCHSD1Q86WN1 690 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 MB21D2Q8IYB1 491 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-208ENST00000470076 IL31RAQ8NI17 732 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 SPATA33Q96N06 139 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 MAP3K14Q99558 947 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 ALG1Q9BT22 464 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 RBM8AQ9Y5S9 174 aaKnown RBP20.24■□□□□ 0.83
COL7A1-208ENST00000470076 KIF28PB7ZC32 967 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 CA3P07451 260 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 HSDL1Q3SXM5 330 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 HERC6Q8IVU3 1022 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 ATXN2LQ8WWM7 1075 aaKnown RBP20.23■□□□□ 0.83
COL7A1-208ENST00000470076 DHX38Q92620 1227 aaKnown RBP20.23■□□□□ 0.83
COL7A1-208ENST00000470076 MTA3Q9BTC8 594 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 THEGQ9P2T0 379 aa20.23■□□□□ 0.83
COL7A1-208ENST00000470076 STAM2O75886 525 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 CKBP12277 381 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 UBA1P22314 1058 aaKnown RBP20.22■□□□□ 0.83
COL7A1-208ENST00000470076 KIF5BP33176 963 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 KCNJ6P48051 423 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 PTK7Q13308 1070 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 GNPTABQ3T906 1256 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 CTCFLQ8NI51 663 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-208ENST00000470076 MLXIPQ9HAP2 919 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 PRDM6Q9NQX0 595 aa20.22■□□□□ 0.83
COL7A1-208ENST00000470076 DDAH1O94760 285 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 CXCL10P02778 98 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 SMARCA1P28370 1054 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 SP2Q02086 613 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 GPNMBQ14956 572 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 CCDC85BQ15834 202 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-208ENST00000470076 CASC1Q6TDU7 716 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 ZNF654Q8IZM8 581 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 SPZ1Q9BXG8 430 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 LY9Q9HBG7 655 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 FRMPD4Q14CM0 1322 aa20.21■□□□□ 0.83
COL7A1-208ENST00000470076 NCOR1O75376 2440 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 SORBS3O60504 671 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 CNKSR3Q6P9H4 555 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 TMTC2Q8N394 836 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 RRP36Q96EU6 259 aaKnown RBP20.2■□□□□ 0.82
COL7A1-208ENST00000470076 LZTS2Q9BRK4 669 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 REV3LO60673 3130 aa20.2■□□□□ 0.82
COL7A1-208ENST00000470076 PTPRSQ13332 1948 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 PRC1O43663 620 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 ICAM3P32942 547 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 MCM5P33992 734 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 WDR5P61964 334 aaKnown RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 TRIM71Q2Q1W2 868 aaKnown RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 PIBF1Q8WXW3 757 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 GPKOWQ92917 476 aaPredicted RBP eCLIP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 ZFP91Q96JP5 570 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 INPP4AQ96PE3 977 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 C16orf70Q9BSU1 422 aa20.19■□□□□ 0.82
COL7A1-208ENST00000470076 TSPYL2Q9H2G4 693 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 PRRC2BQ5JSZ5 2229 aaKnown RBP20.19■□□□□ 0.82
COL7A1-208ENST00000470076 ABHD14A-ACY1A0A1B0GW23 586 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 TLL1O43897 1013 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 NBNO60934 754 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 EFCAB14O75071 495 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 POU3F3P20264 500 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-208ENST00000470076 GNAQP50148 359 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 MRPS9P82933 396 aaKnown RBP20.18■□□□□ 0.82
COL7A1-208ENST00000470076 TAP1Q03518 808 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 NEDD9Q14511 834 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 CUL5Q93034 780 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 TMEM87BQ96K49 555 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 ASB2Q96Q27 587 aa20.18■□□□□ 0.82
COL7A1-208ENST00000470076 LSG1Q9H089 658 aaKnown RBP20.18■□□□□ 0.82
COL7A1-208ENST00000470076 SEC63Q9UGP8 760 aaKnown RBP20.18■□□□□ 0.82
COL7A1-208ENST00000470076 CCDC69A6NI79 296 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 SPATA31C2B4DYI2 1134 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 H3BRB1 525 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 PIK3CDO00329 1044 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 NOP56O00567 594 aaKnown RBP20.17■□□□□ 0.82
COL7A1-208ENST00000470076 FIBPO43427 364 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 GTPBP6O43824 516 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-208ENST00000470076 MRPS5P82675 430 aaKnown RBP20.17■□□□□ 0.82
COL7A1-208ENST00000470076 ZNF200P98182 395 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-208ENST00000470076 ZNF618Q5T7W0 954 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 XRRA1Q6P2D8 792 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 METTL7BQ6UX53 244 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 NFXL1Q6ZNB6 911 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 SERINC5Q86VE9 423 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 SMARCC2Q8TAQ2 1214 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 MYL10Q9BUA6 226 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 USP26Q9BXU7 913 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 TUT1Q9H6E5 874 aaKnown RBP20.17■□□□□ 0.82
COL7A1-208ENST00000470076 MUC3AQ02505 3323 aa20.17■□□□□ 0.82
COL7A1-208ENST00000470076 SH2B2O14492 632 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-208ENST00000470076 LGALS2P05162 132 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 CALM1P0DP23 149 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 CALM2P0DP24 149 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 CALM3P0DP25 149 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 LIFRP42702 1097 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 IKBKEQ14164 716 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 HIC1Q14526 733 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 PCNX4Q63HM2 1172 aa20.16■□□□□ 0.82
COL7A1-208ENST00000470076 TRAF7Q6Q0C0 670 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms