RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 FRMPD4Q14CM0 1322 aa21.28■■□□□ 1
SMC4-209ENST00000468653 IKBKBO14920 756 aa21.28■■□□□ 1
SMC4-209ENST00000468653 FKBP1BP68106 108 aa21.28■■□□□ 1
SMC4-209ENST00000468653 PABPC4Q13310 644 aaKnown RBP eCLIP21.28■■□□□ 18e-9■■■■■ 603.5
SMC4-209ENST00000468653 HYIQ5T013 277 aa21.28■■□□□ 1
SMC4-209ENST00000468653 LARP4BQ92615 738 aaKnown RBP21.28■■□□□ 1
SMC4-209ENST00000468653 RAD54LQ92698 747 aa21.28■■□□□ 1
SMC4-209ENST00000468653 SLC5A5Q92911 643 aa21.28■■□□□ 1
SMC4-209ENST00000468653 ZNF577Q9BSK1 485 aa21.28■■□□□ 1
SMC4-209ENST00000468653 PXMP2Q9NR77 195 aa21.28■■□□□ 1
SMC4-209ENST00000468653 BLOC1S4Q9NUP1 217 aa21.28■■□□□ 1
SMC4-209ENST00000468653 VAV3Q9UKW4 847 aa21.28■■□□□ 1
SMC4-209ENST00000468653 ARP10275 920 aa21.27■■□□□ 1
SMC4-209ENST00000468653 GJA5P36382 358 aa21.27■■□□□ 1
SMC4-209ENST00000468653 MCM6Q14566 821 aa21.27■■□□□ 1
SMC4-209ENST00000468653 PGM5Q15124 567 aa21.27■■□□□ 1
SMC4-209ENST00000468653 ECM1Q16610 540 aa21.27■■□□□ 1
SMC4-209ENST00000468653 NIPA1Q7RTP0 329 aa21.27■■□□□ 1
SMC4-209ENST00000468653 CHST13Q8NET6 341 aa21.27■■□□□ 1
SMC4-209ENST00000468653 MAF1Q9H063 256 aa21.27■■□□□ 1
SMC4-209ENST00000468653 GBA2Q9HCG7 927 aaPredicted RBP21.27■■□□□ 1
SMC4-209ENST00000468653 GAS7O60861 476 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 ITGB5P18084 799 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 OSBPP22059 807 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 MYL5Q02045 173 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 C2orf69Q8N8R5 385 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 CCDC47Q96A33 483 aaKnown RBP21.26■□□□□ 0.99
SMC4-209ENST00000468653 TRIM44Q96DX7 344 aaPredicted RBP21.26■□□□□ 0.99
SMC4-209ENST00000468653 C7orf25Q9BPX7 421 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 PDCD2LQ9BRP1 358 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 TRIM9Q9C026 710 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 LRRC27Q9C0I9 530 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 BTBD7Q9P203 1132 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 KIAA1024Q9UPX6 916 aa21.26■□□□□ 0.99
SMC4-209ENST00000468653 PSMD10O75832 226 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 BCRP11274 1271 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 MYCLP12524 364 aaPredicted RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 HERVK_113P62684 666 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 MOGSQ13724 837 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 CT47A1Q5JQC4 288 aaPredicted RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 ZNF526Q8TF50 670 aaPredicted RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 PURBQ96QR8 312 aaKnown RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 PAGR1Q9BTK6 254 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 TRIM5Q9C035 493 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 NMRK2Q9NPI5 230 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 A1CFQ9NQ94 594 aaKnown RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 CYP39A1Q9NYL5 469 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 UBIAD1Q9Y5Z9 338 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 POTEB3A0JP26 581 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 CELF2O95319 508 aaKnown RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 ASIC1P78348 528 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 MRPS9P82933 396 aaKnown RBP21.25■□□□□ 0.99
SMC4-209ENST00000468653 KCNB1Q14721 858 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 NCAPHQ15003 741 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 POTEBQ6S5H4 581 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 POTEEQ6S8J3 1075 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 OTOP1Q7RTM1 612 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 KCNK18Q7Z418 384 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 RIOX2Q8IUF8 465 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 TEKT3Q9BXF9 490 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 WDR11Q9BZH6 1224 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 JADE2Q9NQC1 790 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 FBXO40Q9UH90 709 aa21.25■□□□□ 0.99
SMC4-209ENST00000468653 IPO5O00410 1097 aaKnown RBP21.24■□□□□ 0.99
SMC4-209ENST00000468653 MED24O75448 989 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 ERCC5P28715 1186 aaPredicted RBP21.24■□□□□ 0.99
SMC4-209ENST00000468653 SEMA3FQ13275 785 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 PPP2R5CQ13362 524 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 KMT5BQ4FZB7 885 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 ZNF658Q5TYW1 1059 aaPredicted RBP21.24■□□□□ 0.99
SMC4-209ENST00000468653 XRRA1Q6P2D8 792 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 NSUN6Q8TEA1 469 aaKnown RBP21.24■□□□□ 0.99
SMC4-209ENST00000468653 SPATC1LQ9H0A9 340 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 KCNH7Q9NS40 1196 aa21.24■□□□□ 0.99
SMC4-209ENST00000468653 PEX10O60683 326 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 RPA1P27694 616 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 CCND2P30279 289 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 GPAT2Q6NUI2 795 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 CATSPER3Q86XQ3 398 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 SMYD4Q8IYR2 804 aaPredicted RBP21.23■□□□□ 0.99
SMC4-209ENST00000468653 RIT2Q99578 217 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 EIF2AK1Q9BQI3 630 aaKnown RBP21.23■□□□□ 0.99
SMC4-209ENST00000468653 EML1O00423 815 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 CHMP2AO43633 222 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 KLRC4O43908 158 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 MTMR1Q13613 665 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 KLHL10Q6JEL2 608 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 SARM1Q6SZW1 724 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 NCAPG2Q86XI2 1143 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 ANKRD35Q8N283 1001 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 EXOC1Q9NV70 894 aa21.23■□□□□ 0.99
SMC4-209ENST00000468653 POTEFA5A3E0 1075 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 MYMKA6NI61 221 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 RHOBTB3O94955 611 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 SSBP05455 408 aaKnown RBP eCLIP21.22■□□□□ 0.999e-17■■■■■ 55.5
SMC4-209ENST00000468653 NR3C2P08235 984 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 CD44P16070 742 aaKnown RBP21.22■□□□□ 0.99
SMC4-209ENST00000468653 ZNF75DP51815 510 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 POTEGQ6S5H5 508 aa21.22■□□□□ 0.99
SMC4-209ENST00000468653 ENOX1Q8TC92 643 aaKnown RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms