RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ASGR2P07307 311 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 CSRP3P50461 194 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 NOVA1P51513 510 aaKnown RBP6.51□□□□□ -1.37
HMGB1-207ENST00000468384 DEFB103AP81534 67 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 CFHR1Q03591 330 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 SERINC3Q13530 473 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 SPECC1Q5M775 1068 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 COPS6Q7L5N1 327 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 FAM181AQ8N9Y4 354 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 ZBTB44Q8NCP5 570 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 LIN37Q96GY3 246 aaPredicted RBP6.51□□□□□ -1.37
HMGB1-207ENST00000468384 CRELD1Q96HD1 420 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 HCFC2Q9Y5Z7 792 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 SHROOM3Q8TF72 1996 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 COL11A1P12107 1806 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-207ENST00000468384 MYADML2A6NDP7 307 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 TTLL8A6PVC2 850 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 ASGR1P07306 291 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 DCNP07585 359 aaKnown RBP6.5□□□□□ -1.37
HMGB1-207ENST00000468384 RETP07949 1114 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 HMOX1P09601 288 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 HOXA7P31268 230 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-207ENST00000468384 IL13P35225 146 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 RFC2P35250 354 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 CCNA1P78396 465 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 LPAL2Q16609 132 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 LAIR1Q6GTX8 287 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 SLC43A3Q8NBI5 491 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 FAM151AQ8WW52 585 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 GZF1Q9H116 711 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-207ENST00000468384 PRM3Q9NNZ6 103 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 DLGAP2Q9P1A6 1054 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 NRBP1Q9UHY1 535 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 FBXL21Q9UKT6 434 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 BARX2Q9UMQ3 279 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-207ENST00000468384 NR2E1Q9Y466 385 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 OTOGQ6ZRI0 2925 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 PTPRSQ13332 1948 aa6.5□□□□□ -1.37
HMGB1-207ENST00000468384 ROBO3Q96MS0 1386 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 HTATSF1O43719 755 aaKnown RBP6.49□□□□□ -1.37
HMGB1-207ENST00000468384 B4GALT4O60513 344 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 CTNND1O60716 968 aaKnown RBP6.49□□□□□ -1.37
HMGB1-207ENST00000468384 UPP2O95045 317 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 IL1R1P14778 569 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 ELAVL4P26378 380 aaKnown RBP6.49□□□□□ -1.37
HMGB1-207ENST00000468384 ADORA2AP29274 412 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 CCDC152Q4G0S7 254 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 MEIOBQ8N635 442 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 EFHBQ8N7U6 833 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 PCSK9Q8NBP7 692 aaKnown RBP6.49□□□□□ -1.37
HMGB1-207ENST00000468384 ZSCAN32Q9NX65 697 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 KLK13Q9UKR3 277 aa6.49□□□□□ -1.37
HMGB1-207ENST00000468384 URB1O60287 2271 aaKnown RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 FBN1P35555 2871 aaKnown RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 ATP5J2-PTCD1G3V325 749 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 CAPN9O14815 690 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 GLP2RO95838 553 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 AKR1A1P14550 325 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 TAL1P17542 331 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 RFX1P22670 979 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 CST5P28325 142 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 LRP8Q14114 963 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 AASDHQ4L235 1098 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 MFSD14BQ5SR56 506 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 TMCO4Q5TGY1 634 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 STPG1Q5TH74 334 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 KIAA1211LQ6NV74 962 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 LRP10Q7Z4F1 713 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 TMEM192Q8IY95 271 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 ZNF280CQ8ND82 737 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 RGS22Q8NE09 1264 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 SHCBP1Q8NEM2 672 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 CCDC85AQ96PX6 553 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 THUMPD2Q9BTF0 503 aaKnown RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 FBXO4Q9UKT5 387 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 RAB23Q9ULC3 237 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 RAXQ9Y2V3 346 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 INSL6Q9Y581 213 aa6.48□□□□□ -1.37
HMGB1-207ENST00000468384 LRRFIP2Q9Y608 721 aaKnown RBP6.48□□□□□ -1.37
HMGB1-207ENST00000468384 AHCTF1Q8WYP5 2266 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 SCN5AQ14524 2016 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.47□□□□□ -1.37
HMGB1-207ENST00000468384 C2CD4DB7Z1M9 353 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 CNMDO75829 334 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 CSTF1Q05048 431 aaKnown RBP6.47□□□□□ -1.37
HMGB1-207ENST00000468384 TCP10Q12799 353 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 NKAPLQ5M9Q1 402 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 HDGFL1Q5TGJ6 251 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 FBXO11Q86XK2 927 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 RDH13Q8NBN7 331 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 LMAN2LQ9H0V9 348 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 ZNF768Q9H5H4 540 aaKnown RBP6.47□□□□□ -1.37
HMGB1-207ENST00000468384 MTMR7Q9Y216 660 aa6.47□□□□□ -1.37
HMGB1-207ENST00000468384 PDZD2O15018 2839 aa6.46□□□□□ -1.37
HMGB1-207ENST00000468384 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.37
HMGB1-207ENST00000468384 GRM6O15303 877 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 HOXA2O43364 376 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 NR3C2P08235 984 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 C6orf222P0C671 652 aaPredicted RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 ZNF865P0CJ78 1059 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms