RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PPFIA4O75335 1185 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 STAM2O75886 525 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 SELPP16109 830 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 MYSM1Q5VVJ2 828 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 CREB3L3Q68CJ9 461 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 LRRC8DQ7L1W4 858 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 CENPQQ7L2Z9 268 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-206ENST00000466591 MICALL1Q8N3F8 863 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 MTA3Q9BTC8 594 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 ZBED2Q9BTP6 218 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 SPZ1Q9BXG8 430 aa20.2■□□□□ 0.82
COL7A1-206ENST00000466591 YBX2Q9Y2T7 364 aaKnown RBP20.2■□□□□ 0.82
COL7A1-206ENST00000466591 PARNO95453 639 aaKnown RBP20.19■□□□□ 0.82
COL7A1-206ENST00000466591 F2P00734 622 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 RXRAP19793 462 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 UBA1P22314 1058 aaKnown RBP20.19■□□□□ 0.82
COL7A1-206ENST00000466591 NEDD9Q14511 834 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 IL27Q8NEV9 243 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 KAT2BQ92831 832 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 LSG1Q9H089 658 aaKnown RBP20.19■□□□□ 0.82
COL7A1-206ENST00000466591 TSPYL2Q9H2G4 693 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-206ENST00000466591 RTEL1Q9NZ71 1219 aa20.19■□□□□ 0.82
COL7A1-206ENST00000466591 SH2B2O14492 632 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 BAIAP3O94812 1187 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 FGD1P98174 961 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 CCDC85BQ15834 202 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 HSDL1Q3SXM5 330 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 NLRX1Q86UT6 975 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 RAB11FIP4Q86YS3 637 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 CCDC82Q8N4S0 544 aa20.18■□□□□ 0.82
COL7A1-206ENST00000466591 SYMPKQ92797 1274 aaKnown RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 COL25A1Q9BXS0 654 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 NAP1L2Q9ULW6 460 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 LAMA2P24043 3122 aaKnown RBP20.18■□□□□ 0.82
COL7A1-206ENST00000466591 SPDYE3A6NKU9 549 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 FIBPO43427 364 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 MYOGP15173 224 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 SP4Q02446 784 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 PTK7Q13308 1070 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 SLC35G1Q2M3R5 365 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 MICU3Q86XE3 530 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 CMTR1Q8N1G2 835 aaKnown RBP20.17■□□□□ 0.82
COL7A1-206ENST00000466591 PHOSPHO2Q8TCD6 241 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 LRRC2Q9BYS8 371 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 EHMT1Q9H9B1 1298 aa20.17■□□□□ 0.82
COL7A1-206ENST00000466591 ZNF215Q9UL58 517 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-206ENST00000466591 TANC1Q9C0D5 1861 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 C17orf102A2RUQ5 167 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 GTPBP6O43824 516 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-206ENST00000466591 TLL1O43897 1013 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 RGS20O76081 388 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 PLEKHA8P1O95397 391 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 CA3P07451 260 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 CKBP12277 381 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 SMARCA1P28370 1054 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 LIFRP42702 1097 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 SKIV2LQ15477 1246 aaKnown RBP20.16■□□□□ 0.82
COL7A1-206ENST00000466591 BMP2KLQ5H9B9 411 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 USP17L6PQ6QN14 398 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 CYFIP1Q7L576 1253 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 HEATR3Q7Z4Q2 680 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 PSTPIP2Q9H939 334 aa20.16■□□□□ 0.82
COL7A1-206ENST00000466591 H3BRB1 525 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 THPOP40225 353 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 UTP14CQ5TAP6 766 aaKnown RBP20.15■□□□□ 0.82
COL7A1-206ENST00000466591 CNKSR3Q6P9H4 555 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 HERC6Q8IVU3 1022 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 GIMAP8Q8ND71 665 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-206ENST00000466591 ATP6V0A1Q93050 837 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 NEK1Q96PY6 1258 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 TUT1Q9H6E5 874 aaKnown RBP20.15■□□□□ 0.82
COL7A1-206ENST00000466591 CERS4Q9HA82 394 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 SCN5AQ14524 2016 aa20.15■□□□□ 0.82
COL7A1-206ENST00000466591 BAZ2BQ9UIF8 2168 aaKnown RBP20.15■□□□□ 0.82
COL7A1-206ENST00000466591 MYH7BA7E2Y1 1941 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 LGALS2P05162 132 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 GNAT1P11488 350 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 SP2Q02086 613 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 IKBKEQ14164 716 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 PCNX4Q63HM2 1172 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 XRRA1Q6P2D8 792 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 METTL7BQ6UX53 244 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 SRBD1Q8N5C6 995 aaKnown RBP20.14■□□□□ 0.81
COL7A1-206ENST00000466591 GPKOWQ92917 476 aaPredicted RBP eCLIP20.14■□□□□ 0.81
COL7A1-206ENST00000466591 CDHR1Q96JP9 859 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 USP26Q9BXU7 913 aa20.14■□□□□ 0.81
COL7A1-206ENST00000466591 GBF1Q92538 1859 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 EMSYQ7Z589 1322 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 hCG_1642624A0A1W2PR95 340 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 HAS3O00219 553 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 EFCAB14O75071 495 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 CDC45O75419 566 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 NECTIN1Q15223 517 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 USP38Q8NB14 1042 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 FANCBQ8NB91 859 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 ARNTL2Q8WYA1 636 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 INPP4AQ96PE3 977 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-206ENST00000466591 RBM28Q9NW13 759 aaKnown RBP20.13■□□□□ 0.81
COL7A1-206ENST00000466591 THEGQ9P2T0 379 aa20.13■□□□□ 0.81
COL7A1-206ENST00000466591 SPATA31C2B4DYI2 1134 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms