RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 WASF1Q92558 559 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 GLT1D1Q96MS3 346 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 TSEN34Q9BSV6 310 aaKnown RBP13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 BCAS3Q9H6U6 928 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 MLXIPQ9HAP2 919 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 STARD7Q9NQZ5 370 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 Q9Y3F1 56 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 STK36Q9NRP7 1315 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 MOXD2PA6NHM9 499 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 PQBP1O60828 265 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 STAM2O75886 525 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 CD2BP2O95400 341 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 FDPSP14324 419 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 ITGB5P18084 799 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 UBA1P22314 1058 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 CLK2P49760 499 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 RTP1P59025 263 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 PSMC6P62333 389 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 ARHGAP4P98171 946 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 ARHGAP1Q07960 439 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 AP3B2Q13367 1082 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 TRIM60Q495X7 471 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 CCSAPQ6IQ19 270 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 XRRA1Q6P2D8 792 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 KCNV1Q6PIU1 500 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 CYFIP1Q7L576 1253 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 BLIDQ8IZY5 108 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 SH2B1Q9NRF2 756 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 ZMYND8Q9ULU4 1186 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 PCDHA4Q9UN74 947 aa13.74□□□□□ -0.21
SHROOM3-202ENST00000466541 SPATA31C2B4DYI2 1134 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 H0YGN5 161 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 FIBPO43427 364 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 SYN1P17600 705 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 CST5P28325 142 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 GUCY1B3Q02153 619 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 SEMA3FQ13275 785 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 MTMR1Q13613 665 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 LAMC2Q13753 1193 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 TRIM29Q14134 588 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 CELF3Q5SZQ8 465 aaKnown RBP13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 SPATA33Q96N06 139 aa13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 INPP4AQ96PE3 977 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-202ENST00000466541 NOP56O00567 594 aaKnown RBP13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 ATP9AO75110 1047 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 SREBF1P36956 1147 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 FAM184AQ8NB25 1140 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 TMX3Q96JJ7 454 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 MXRA8Q9BRK3 442 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 PHF20Q9BVI0 1012 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 JADE2Q9NQC1 790 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 PRDM5Q9NQX1 630 aaPredicted RBP13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 POLR3EQ9NVU0 708 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 NR2E3Q9Y5X4 410 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 UBIAD1Q9Y5Z9 338 aa13.72□□□□□ -0.21
SHROOM3-202ENST00000466541 A0A0U1RQG5 324 aaPredicted RBP13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 CCDC194A0A1B0GVG4 234 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 A6NJR5 290 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 MMP3P08254 477 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 ZNF286BP0CG31 522 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 ARP10275 920 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 TGFB3P10600 412 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 PURAQ00577 322 aaKnown RBP13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 TLE2Q04725 743 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 NEDD9Q14511 834 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 DGKDQ16760 1214 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 CEP55Q53EZ4 464 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 FAM47CQ5HY64 1035 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 MYSM1Q5VVJ2 828 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 PLA2G4DQ86XP0 818 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 OXER1Q8TDS5 423 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 TBCKQ8TEA7 893 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 GPRASP2Q96D09 838 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 MTG1Q9BT17 334 aaPredicted RBP13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 TELO2Q9Y4R8 837 aa13.71□□□□□ -0.21
SHROOM3-202ENST00000466541 ELP1O95163 1332 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 FAM86B1E9PN63 330 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 DDX39AO00148 427 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 CABYRO75952 493 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 FAM86B2P0C5J1 330 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 ICAM3P32942 547 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 KRT2P35908 639 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 NKX3-2P78367 333 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 ITGA7Q13683 1181 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 NPY5RQ15761 445 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 HSDL1Q3SXM5 330 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 PRR16Q569H4 304 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 UTP14CQ5TAP6 766 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 MCTP2Q6DN12 878 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 GALNT17Q6IS24 598 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 TEX2Q8IWB9 1127 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 PPTC7Q8NI37 304 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 CDHR1Q96JP9 859 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 C8orf76Q96K31 380 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 LLPHQ9BRT6 129 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 BRMS1Q9HCU9 246 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 KCNH7Q9NS40 1196 aa13.7□□□□□ -0.22
SHROOM3-202ENST00000466541 DCDC2CA8MYV0 355 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 ARVCFO00192 962 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 KPNA6O60684 536 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms