RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 AFG1LQ8WV93 481 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ATG4CQ96DT6 458 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 LOXL4Q96JB6 756 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ARRDC1-AS1Q9H2J1 176 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 CDH22Q9UJ99 828 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ADAMTS8Q9UP79 889 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 HELZ2Q9BYK8 2649 aaKnown RBP3.26□□□□□ -1.89
USP40-211ENST00000464956 ADAMTS20P59510 1910 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 DOCK1Q14185 1865 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 A0A1B0GUL6 1792 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DNAJC25-GNG10A0A024R161 153 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ASB14A6NK59 587 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 NEURL1BA8MQ27 555 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ERVH48-1M5A8F1 160 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 RAD21O60216 631 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 PPFIA3O75145 1194 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 CFBP00751 764 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 IGKV5-2P06315 115 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 WEE2P0C1S8 567 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 C6P13671 934 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 RPS9P46781 194 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 SIM1P81133 766 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 UBAP2LQ14157 1087 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 ZNF423Q2M1K9 1284 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 SHROOM1Q2M3G4 852 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 PLEKHG4Q58EX7 1191 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 RARS2Q5T160 578 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 TMEM63BQ5T3F8 832 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ZNF618Q5T7W0 954 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 KANK3Q6NY19 840 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ZNF710Q8N1W2 664 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ANKRD35Q8N283 1001 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 SLC44A3Q8N4M1 653 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 CHCHD4Q8N4Q1 142 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 FAM133AQ8N9E0 248 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DEFB124Q8NES8 71 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 PIP4K2CQ8TBX8 421 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 ACER1Q8TDN7 264 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DHX38Q92620 1227 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 APBB2Q92870 758 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 FAM163AQ96GL9 167 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 ZNF594Q96JF6 807 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 FCRL3Q96P31 734 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 DCBLD2Q96PD2 775 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 MYADMQ96S97 322 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 NELL2Q99435 816 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 MYH16Q9H6N6 1097 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 PHAXQ9H814 394 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 CABP5Q9NP86 173 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 SLC2A4RGQ9NR83 387 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 VPS45Q9NRW7 570 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DZANK1Q9NVP4 752 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DKK4Q9UBT3 224 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 SEPT3Q9UH03 358 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 MRPS17Q9Y2R5 130 aaKnown RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 MAP3K2Q9Y2U5 619 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 PCDHGA5Q9Y5G8 931 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 HEMK1Q9Y5R4 338 aaPredicted RBP3.25□□□□□ -1.89
USP40-211ENST00000464956 SIP14410 1827 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 DOPEY1Q5JWR5 2465 aa3.25□□□□□ -1.89
USP40-211ENST00000464956 FRMPD4Q14CM0 1322 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 GPR75-ASB3A0A0A6YYF3 556 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 SPDYE4A6NLX3 237 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 RSPH10B2B2RC85 870 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 USP17L12C9JPN9 530 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 USP17L21D6R901 530 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 SEMA3EO15041 775 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 ZZEF1O43149 2961 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 HRO43593 1189 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 HLA-DOAP06340 250 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 RSPH10BP0C881 870 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 CR2P20023 1033 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PTGS1P23219 599 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 ADSSP30520 456 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 MPLP40238 635 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 IL12RB1P42701 662 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 CCR3P51677 355 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PRKCQQ04759 706 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 ADCY1Q08828 1119 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 MTAPQ13126 283 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PTK7Q13308 1070 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 SNW1Q13573 536 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 MLF2Q15773 248 aaPredicted RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 KRT24Q2M2I5 525 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 CWF19L2Q2TBE0 894 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 METTL24Q5JXM2 366 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PLPP4Q5VZY2 271 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 RSPO2Q6UXX9 243 aaPredicted RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 LRRC69Q6ZNQ3 347 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 GPR155Q7Z3F1 870 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 SESTD1Q86VW0 696 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 CMTR2Q8IYT2 770 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 TMEM87AQ8NBN3 555 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 OR6J1Q8NGC5 347 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PPP1R13LQ8WUF5 828 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 RSAD2Q8WXG1 361 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 CLDN23Q96B33 292 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 WBP1Q96G27 269 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PURBQ96QR8 312 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms