RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF507Q8TCN5 953 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 ARHGAP20Q9P2F6 1191 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-208ENST00000463007 TTI2Q6NXR4 508 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 EFCAB13Q8IY85 973 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 EHBP1Q8NDI1 1231 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 NEDD1Q8NHV4 660 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 P2RX5Q93086 422 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 GGA1Q9UJY5 639 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 SNX12Q9UMY4 172 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 ZC3H4Q9UPT8 1303 aaKnown RBP13.76□□□□□ -0.21
HDAC4-208ENST00000463007 TUBBP07437 444 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 LDHCP07864 332 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 SLC1A4P43007 532 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 VAV2P52735 878 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 TUBB4BP68371 445 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 ZBED6P86452 979 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 NNTQ13423 1086 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 MAPKAPK5Q8IW41 473 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 PROM2Q8N271 834 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 OR2W6PQ8NHA6 318 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 RPGRQ92834 1020 aaKnown RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 ZIM3Q96PE6 472 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 KRT12Q99456 494 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 BIN2Q9UBW5 565 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 SRGNP10124 158 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 EEF1GP26641 437 aaKnown RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 LONP1P36776 959 aaKnown RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 CDK8P49336 464 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 GABPAQ06546 454 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 EHHADHQ08426 723 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 TTMPQ5BVD1 217 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 GALNT17Q6IS24 598 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 RBM17Q96I25 401 aaKnown RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 A0A087WUV0 522 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 KIAA0754O94854 1291 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 GLI1P08151 1106 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 SMARCA1P28370 1054 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 AARSP49588 968 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDAC4-208ENST00000463007 GNAQP50148 359 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 IQCEQ6IPM2 695 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 OTUD6BQ8N6M0 293 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 ZMYND12Q9H0C1 365 aa13.75□□□□□ -0.21
HDAC4-208ENST00000463007 IGKV6D-41A0A0C4DH26 115 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 KLRC4O43908 158 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 TSPY3P0CV98 308 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 TSPY8P0CW00 308 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 NAPAP54920 295 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 PPFIA1Q13136 1202 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 CFAP58Q5T655 872 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 NELFCDQ8IXH7 590 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 CCDC47Q96A33 483 aaKnown RBP13.74□□□□□ -0.21
HDAC4-208ENST00000463007 MTMR8Q96EF0 704 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 TRPC5Q9UL62 973 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-208ENST00000463007 HEXIM1O94992 359 aaKnown RBP13.74□□□□□ -0.21
HDAC4-208ENST00000463007 TRIM58Q8NG06 486 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 ALS2CR12Q96Q35 445 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 UBA5Q9GZZ9 404 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 VIPAS39Q9H9C1 493 aa13.74□□□□□ -0.21
HDAC4-208ENST00000463007 FECHP22830 423 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 EIF6P56537 245 aaKnown RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 ODF2Q5BJF6 829 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 DDX42Q86XP3 938 aaKnown RBP eCLIP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 NOC3LQ8WTT2 800 aaKnown RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 CDK5RAP3Q96JB5 506 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 JPH2Q9BR39 696 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 LZTS2Q9BRK4 669 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 STIM2Q9P246 746 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 MARCH6O60337 910 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 IFT88Q13099 833 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 RNPC3Q96LT9 517 aaKnown RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 EIF3HO15372 352 aaKnown RBP eCLIP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 RPS6KA5O75582 802 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 PRPHP41219 470 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 GIMAP8Q8ND71 665 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 AENQ8WTP8 325 aaKnown RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 PYM1Q9BRP8 204 aaKnown RBP13.73□□□□□ -0.21
HDAC4-208ENST00000463007 TRIM31Q9BZY9 425 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 TRIM9Q9C026 710 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 THAP9Q9H5L6 903 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 TMEM260Q9NX78 707 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 DAGLAQ9Y4D2 1042 aa13.73□□□□□ -0.21
HDAC4-208ENST00000463007 POTEMA6NI47 508 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 E7EVH7 732 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 SNHG28P0DPA3 235 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 CCNE1P24864 410 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 HNRNPH1P31943 449 aaKnown RBP13.72□□□□□ -0.21
HDAC4-208ENST00000463007 MIIPQ5JXC2 388 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 MFSD14BQ5SR56 506 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 CEP85LQ5SZL2 805 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 HAUS3Q68CZ6 603 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 TBC1D22AQ8WUA7 517 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 NDST4Q9H3R1 872 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 SEMA6BQ9H3T3 888 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 EDIL3O43854 480 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 OPA1O60313 960 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 PLCG2P16885 1265 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 RAPGEF1Q13905 1077 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 USP17L2Q6R6M4 530 aa13.72□□□□□ -0.21
HDAC4-208ENST00000463007 MMS22LQ6ZRQ5 1243 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms