RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	CYB5R4	Q7L1T6	521 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	VSIG10L	Q86VR7	867 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	GDPD5	Q8WTR4	605 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	C16orf70	Q9BSU1	422 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	TRIO	O75962	3097 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	C5orf42	Q9H799	3197 aa		13.02	□□□□□ -0.33
PTPN7-204	ENST00000462815	ABHD14A-ACY1	A0A1B0GW23	586 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	LINC01553	A4QN01	128 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	PALM3	A6NDB9	673 aa	Predicted RBP	13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	KIF28P	B7ZC32	967 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	CFB	P00751	764 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	KCNJ6	P48051	423 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	CHMP4BP1	P59074	171 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	LAMC2	Q13753	1193 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	PGM5	Q15124	567 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	B4GALNT3	Q6L9W6	998 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	SERINC5	Q86VE9	423 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	ALG1	Q9BT22	464 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	KATNAL1	Q9BW62	490 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	AMN	Q9BXJ7	453 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	OSBPL7	Q9BZF2	842 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	EPHX3	Q9H6B9	360 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	BCAS3	Q9H6U6	928 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	SUGCT	Q9HAC7	445 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	C11orf16	Q9NQ32	467 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	LMCD1	Q9NZU5	365 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	MRVI1	Q9Y6F6	885 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	FRMPD4	Q14CM0	1322 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	MICAL3	Q7RTP6	2002 aa		13.01	□□□□□ -0.33
PTPN7-204	ENST00000462815	WDFY4	Q6ZS81	3184 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	MYH7B	A7E2Y1	1941 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	ZBTB5	O15062	677 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	CYTH3	O43739	400 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	UBA1	P22314	1058 aa	Known RBP	13	□□□□□ -0.33
PTPN7-204	ENST00000462815	PLA2G5	P39877	138 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	AAMP	Q13685	434 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	CELF3	Q5SZQ8	465 aa	Known RBP	13	□□□□□ -0.33
PTPN7-204	ENST00000462815	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13	□□□□□ -0.33
PTPN7-204	ENST00000462815	C7orf31	Q8N865	590 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	SP7	Q8TDD2	431 aa	Predicted RBP	13	□□□□□ -0.33
PTPN7-204	ENST00000462815	HLA-C	Q95604	372 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	RAD9A	Q99638	391 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	SENP2	Q9HC62	589 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	VAT1L	Q9HCJ6	419 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	CD320	Q9NPF0	282 aa		13	□□□□□ -0.33
PTPN7-204	ENST00000462815	MAP3K20	Q9NYL2	800 aa	Known RBP	13	□□□□□ -0.33
PTPN7-204	ENST00000462815	BRWD1	Q9NSI6	2320 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	KLRF2	D3W0D1	207 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	PPFIA4	O75335	1185 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	HOXA13	P31271	388 aa	Predicted RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	HTRA4	P83105	476 aa	Predicted RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	SEMA3F	Q13275	785 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	IMMT	Q16891	758 aa	Known RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	DHX37	Q8IY37	1157 aa	Known RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	SAMD3	Q8N6K7	520 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	YTHDC1	Q96MU7	727 aa	Known RBP	12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	KRT23	Q9C075	422 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	RIOX1	Q9H6W3	641 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	DIAPH3	Q9NSV4	1193 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	TAF6L	Q9Y6J9	622 aa		12.99	□□□□□ -0.33
PTPN7-204	ENST00000462815	SORBS3	O60504	671 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	EFCAB14	O75071	495 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	LGR5	O75473	907 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	GGPS1	O95749	300 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	GSPT1	P15170	499 aa	Known RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	MRPS9	P82933	396 aa	Known RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	GRM4	Q14833	912 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	PLEKHG4	Q58EX7	1191 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	IFIT1B	Q5T764	474 aa	Known RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	FAM122A	Q96E09	287 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	ZFP91	Q96JP5	570 aa	Predicted RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	TGS1	Q96RS0	853 aa	Known RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	C17orf80	Q9BSJ5	609 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	C1QTNF1	Q9BXJ1	281 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	RWDD1	Q9H446	243 aa	Predicted RBP	12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	CNNM2	Q9H8M5	875 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	TELO2	Q9Y4R8	837 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	PCDHA1	Q9Y5I3	950 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	ATG2A	Q2TAZ0	1938 aa		12.98	□□□□□ -0.33
PTPN7-204	ENST00000462815	HIP1	O00291	1037 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	DHX16	O60231	1041 aa	Known RBP	12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	TGFB3	P10600	412 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	MYCL	P12524	364 aa	Predicted RBP	12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	PDE4A	P27815	886 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	ADAM17	P78536	824 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	TROAP	Q12815	778 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	IKBKE	Q14164	716 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	KCNV1	Q6PIU1	500 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	DBF4B	Q8NFT6	615 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	SPATA33	Q96N06	139 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	INPP4A	Q96PE3	977 aa	Predicted RBP	12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	PIGS	Q96S52	555 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	UBAC1	Q9BSL1	405 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	LRFN3	Q9BTN0	628 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	CTNNA3	Q9UI47	895 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	MTUS1	Q9ULD2	1270 aa		12.97	□□□□□ -0.33
PTPN7-204	ENST00000462815	EMSY	Q7Z589	1322 aa		12.96	□□□□□ -0.33
PTPN7-204	ENST00000462815	DOCK5	Q9H7D0	1870 aa		12.96	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms