RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CTNNA2P26232 953 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 GRIPAP1Q4V328 841 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 BTNL9Q6UXG8 535 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 FRMD5Q7Z6J6 570 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 DTNBP1Q96EV8 351 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TRERF1Q96PN7 1200 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 DCTN3O75935 186 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 MUTP22033 750 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 PDIA6Q15084 440 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TEX11Q8IYF3 940 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 GPATCH11Q8N954 259 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 C1orf167Q5SNV9 1468 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TBX3O15119 743 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 DEUP1Q05D60 604 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 HSP90AA5PQ58FG0 334 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 EPHA10Q5JZY3 1008 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC63Q8NA47 563 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 AGTP01019 485 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 SETSIPP0DME0 302 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 RPS8P62241 208 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 CD302Q8IX05 232 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 GABPB2Q8TAK5 448 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 FTOQ9C0B1 505 aaKnown RBP eCLIP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 MYH15Q9Y2K3 1946 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 PARP4Q9UKK3 1724 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 CEBPAP49715 358 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 DAAM2Q86T65 1068 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 MKNK1Q9BUB5 465 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TMEM206Q9H813 350 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 KLRF2D3W0D1 207 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 GGCXP38435 758 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 SKOR1P84550 965 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 DDB1Q16531 1140 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 MOXD1Q6UVY6 613 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 RIBC1Q8N443 379 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ACRBPQ8NEB7 543 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 P4HA2O15460 535 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 GYPCP04921 128 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 HNRNPH3P31942 346 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 NAA25Q14CX7 972 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ARHGAP18Q8N392 663 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ZNF594Q96JF6 807 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TIPINQ9BVW5 301 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ROPN1BQ9BZX4 212 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ROPN1Q9HAT0 212 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 BARHL2Q9NY43 387 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 PEAK1Q9H792 1746 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 SPOPO43791 374 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 RXRAP19793 462 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 FECHP22830 423 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 EIF4A3P38919 411 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 PPP2R2AP63151 447 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 CTDSPL2Q05D32 466 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 RASGRF1Q13972 1273 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 ZNF827Q17R98 1081 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 SELENOSQ9BQE4 189 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 LSM14BQ9BX40 385 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 RPL26L1Q9UNX3 145 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 MYO3BQ8WXR4 1341 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 MST1RQ04912 1400 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PJA2O43164 708 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 MAPK8IP2Q13387 824 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 Q9H521 79 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TTC26A0AVF1 554 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 KCNK3O14649 394 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 SLC8A3P57103 927 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ADAM9Q13443 819 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 SLC18A3Q16572 532 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TRMT10CQ7L0Y3 403 aaKnown RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TBC1D10CQ8IV04 446 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 MIGA1Q8NAN2 632 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 UBA5Q9GZZ9 404 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 INTS9Q9NV88 658 aaKnown RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TBC1D7Q9P0N9 293 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 DUOX1Q9NRD9 1551 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TMEM94Q12767 1356 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 A0A0A6YYK5 440 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 POTEFA5A3E0 1075 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 POTEIP0CG38 1075 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PHKA1P46020 1223 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 IRX1P78414 480 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TFAP4Q01664 338 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 MAP7Q14244 749 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 MEA1Q16626 185 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 POTEEQ6S8J3 1075 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TRIM9Q9C026 710 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PHACTR1Q9C0D0 580 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ZWINTO95229 277 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ARID5BQ14865 1188 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PODNQ7Z5L7 613 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PSMD1Q99460 953 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 CTTNBP2NLQ9P2B4 639 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PCDHA12Q9UN75 941 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 LIG3P49916 1009 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 VSNL1P62760 191 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 CUL4BQ13620 913 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 WDR11Q9BZH6 1224 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 E7ENQ6 273 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms