RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 LAMC2Q13753 1193 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 NEDD9Q14511 834 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 LRRC26Q2I0M4 334 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 GIMAP8Q8ND71 665 aaPredicted RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 PPTC7Q8NI37 304 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 SENP7Q9BQF6 1050 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 LARP6Q9BRS8 491 aaKnown RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 BACH2Q9BYV9 841 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 RBM19Q9Y4C8 960 aaKnown RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 TRIP12Q14669 1992 aaPredicted RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 SPATA31C2B4DYI2 1134 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 LARGE1O95461 756 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 MMP3P08254 477 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 HOXD8P13378 290 aaPredicted RBP13.55□□□□□ -0.24
VPS52-213ENST00000461743 MCM2P49736 904 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 RTP1P59025 263 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 BEX3Q00994 111 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 CELF3Q5SZQ8 465 aaKnown RBP13.55□□□□□ -0.24
VPS52-213ENST00000461743 NIPA1Q7RTP0 329 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 NSUN7Q8NE18 718 aaKnown RBP13.55□□□□□ -0.24
VPS52-213ENST00000461743 TOX2Q96NM4 488 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 LLPHQ9BRT6 129 aaKnown RBP13.55□□□□□ -0.24
VPS52-213ENST00000461743 VPS54Q9P1Q0 977 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 PCDHA4Q9UN74 947 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 UBIAD1Q9Y5Z9 338 aa13.55□□□□□ -0.24
VPS52-213ENST00000461743 CTDNEP1O95476 244 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 CYP3A4P08684 503 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 NLRP5P59047 1200 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 PURAQ00577 322 aaKnown RBP13.54□□□□□ -0.24
VPS52-213ENST00000461743 SETQ01105 290 aaPredicted RBP13.54□□□□□ -0.24
VPS52-213ENST00000461743 MTMR1Q13613 665 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 LY6KQ17RY6 165 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 TMEM63BQ5T3F8 832 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 MYSM1Q5VVJ2 828 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 METTL7BQ6UX53 244 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 ANKRD33Q7Z3H0 272 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 DHX37Q8IY37 1157 aaKnown RBP13.54□□□□□ -0.24
VPS52-213ENST00000461743 C7orf61Q8IZ16 206 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 CRYGNQ8WXF5 182 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 COPS5Q92905 334 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 FERMT2Q96AC1 680 aa13.54□□□□□ -0.24
VPS52-213ENST00000461743 MTG1Q9BT17 334 aaPredicted RBP13.54□□□□□ -0.24
VPS52-213ENST00000461743 ORC3Q9UBD5 711 aaPredicted RBP13.54□□□□□ -0.24
VPS52-213ENST00000461743 GGPS1O95749 300 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 ATN1P54259 1190 aaPredicted RBP13.53□□□□□ -0.24
VPS52-213ENST00000461743 HMGN5P82970 282 aaKnown RBP13.53□□□□□ -0.24
VPS52-213ENST00000461743 ARHGAP4P98171 946 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 SEMA3FQ13275 785 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 DGKDQ16760 1214 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 TRIM60Q495X7 471 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 CEP55Q53EZ4 464 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 SLC43A3Q8NBI5 491 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 PHF20Q9BVI0 1012 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 KATNAL1Q9BW62 490 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 JADE2Q9NQC1 790 aa13.53□□□□□ -0.24
VPS52-213ENST00000461743 M0R2N6 131 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 ARVCFO00192 962 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 PPFIA3O75145 1194 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 ITGB5P18084 799 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 CDK7P50613 346 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 IRX5P78411 483 aaPredicted RBP13.52□□□□□ -0.25
VPS52-213ENST00000461743 PTPN11Q06124 597 aaPredicted RBP13.52□□□□□ -0.25
VPS52-213ENST00000461743 JAKMIP3Q5VZ66 844 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 CXCL17Q6UXB2 119 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 BLIDQ8IZY5 108 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 NECAB1Q8N987 351 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 AFG1LQ8WV93 481 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 SPATA33Q96N06 139 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 MXRA8Q9BRK3 442 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 MLXIPQ9HAP2 919 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 BRMS1Q9HCU9 246 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 TMEM260Q9NX78 707 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 PRKAG2Q9UGJ0 569 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 ATP11BQ9Y2G3 1177 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 NFASCO94856 1347 aa13.52□□□□□ -0.25
VPS52-213ENST00000461743 RANBP2P49792 3224 aaKnown RBP13.51□□□□□ -0.25
VPS52-213ENST00000461743 DCDC2CA8MYV0 355 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 NOP56O00567 594 aaKnown RBP13.51□□□□□ -0.25
VPS52-213ENST00000461743 TLR3O15455 904 aaKnown RBP13.51□□□□□ -0.25
VPS52-213ENST00000461743 PPFIA4O75335 1185 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 F2P00734 622 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 MYL3P08590 195 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 CLTBP09497 229 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 KCNA2P16389 499 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 PTGS1P23219 599 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 CIITAP33076 1130 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 SP2Q02086 613 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 ST3GAL1Q11201 340 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 ITGA7Q13683 1181 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 NPY5RQ15761 445 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 NFRKBQ6P4R8 1299 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 MOXD1Q6UVY6 613 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 KRT25Q7Z3Z0 450 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 PGBD1Q96JS3 809 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 ALG1Q9BT22 464 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 PDLIM7Q9NR12 457 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 RTEL1Q9NZ71 1219 aa13.51□□□□□ -0.25
VPS52-213ENST00000461743 H0YGN5 161 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 MEIS1O00470 390 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 FDPSP14324 419 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms