RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 FXR2P51116 673 aaKnown RBP eCLIP13.16□□□□□ -0.3
SCN9A-204ENST00000452182 SETQ01105 290 aaPredicted RBP13.16□□□□□ -0.3
SCN9A-204ENST00000452182 ACVR2BQ13705 512 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 Q4G0T1 1027 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 TAPT1Q6NXT6 567 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 KCNV1Q6PIU1 500 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 NLRX1Q86UT6 975 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 CDHR1Q96JP9 859 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
SCN9A-204ENST00000452182 CENPFP49454 3210 aa13.16□□□□□ -0.3
SCN9A-204ENST00000452182 SPATA31C2B4DYI2 1134 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 FIBPO43427 364 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 CCNT1O60563 726 aaKnown RBP13.15□□□□□ -0.3
SCN9A-204ENST00000452182 ZNF865P0CJ78 1059 aaPredicted RBP13.15□□□□□ -0.3
SCN9A-204ENST00000452182 CYBAP13498 195 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 CYP2W1Q8TAV3 490 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 SCFD2Q8WU76 684 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 LENG9Q96B70 501 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 TSPYL2Q9H2G4 693 aaPredicted RBP13.15□□□□□ -0.3
SCN9A-204ENST00000452182 RTEL1Q9NZ71 1219 aa13.15□□□□□ -0.3
SCN9A-204ENST00000452182 TDP2O95551 362 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 CACNB2Q08289 660 aaPredicted RBP13.14□□□□□ -0.31
SCN9A-204ENST00000452182 MTMR1Q13613 665 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 TTC38Q5R3I4 469 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 ATL3Q6DD88 541 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 EEPD1Q7L9B9 569 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 FBXO16Q8IX29 292 aaPredicted RBP13.14□□□□□ -0.31
SCN9A-204ENST00000452182 WDR11Q9BZH6 1224 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 KCNH7Q9NS40 1196 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 CHMP5Q9NZZ3 219 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 DDX25Q9UHL0 483 aaKnown RBP13.14□□□□□ -0.31
SCN9A-204ENST00000452182 ATP6V1DQ9Y5K8 247 aa13.14□□□□□ -0.31
SCN9A-204ENST00000452182 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.13□□□□□ -0.31
SCN9A-204ENST00000452182 WNT7AO00755 349 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 TBX3O15119 743 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 INHAP05111 366 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 TRIM32Q13049 653 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 TTLL4Q14679 1199 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 SLC9C1Q4G0N8 1177 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 PRR16Q569H4 304 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 IQSEC1Q6DN90 963 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 CCDC62Q6P9F0 684 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 SEPT14Q6ZU15 432 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 PLA2G4DQ86XP0 818 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 ZFP91Q96JP5 570 aaPredicted RBP13.13□□□□□ -0.31
SCN9A-204ENST00000452182 SENP7Q9BQF6 1050 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.13□□□□□ -0.31
SCN9A-204ENST00000452182 SEPT4O43236 478 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 NEMFO60524 1076 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 ATP2B1P20020 1258 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 CCDC144BQ3MJ40 725 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 PRAMEF19Q5SWL8 479 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 TRPV1Q8NER1 839 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 KCNMB3Q9NPA1 279 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 PDGFCQ9NRA1 345 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 DDX41Q9UJV9 622 aaKnown RBP13.13□□□□□ -0.31
SCN9A-204ENST00000452182 ZHX1Q9UKY1 873 aaPredicted RBP13.13□□□□□ -0.31
SCN9A-204ENST00000452182 FAM184BQ9ULE4 1060 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 PCDHB6Q9Y5E3 794 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 MRVI1Q9Y6F6 885 aa13.13□□□□□ -0.31
SCN9A-204ENST00000452182 LAD1O00515 517 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 NKRFO15226 690 aaKnown RBP eCLIP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 MSH4O15457 936 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 SLC37A4O43826 429 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 BMP15O95972 392 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 ARP10275 920 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 AKR1A1P14550 325 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 MCM7P33993 719 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 DUSP28Q4G0W2 176 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 FOXD4L5Q5VV16 416 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 FAM173BQ6P4H8 233 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 GIMAP8Q8ND71 665 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 ETNPPLQ8TBG4 499 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 SH3TC2Q8TF17 1288 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 FOXD4L4Q8WXT5 416 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 ARMC5Q96C12 935 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 FAM20AQ96MK3 541 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 ZNF396Q96N95 335 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 AGO4Q9HCK5 861 aaKnown RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 POLR3EQ9NVU0 708 aa13.12□□□□□ -0.31
SCN9A-204ENST00000452182 MORC2Q9Y6X9 1032 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-204ENST00000452182 NFASCO94856 1347 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 IPO5O00410 1097 aaKnown RBP13.11□□□□□ -0.31
SCN9A-204ENST00000452182 ARIH2O95376 493 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 TXNP10599 105 aaKnown RBP13.11□□□□□ -0.31
SCN9A-204ENST00000452182 KCNA2P16389 499 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 ADCYAP1R1P41586 468 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 NEDD9Q14511 834 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 NBR1Q14596 966 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 ZNF174Q15697 407 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 SLFN12Q8IYM2 578 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 C4orf32Q8N8J7 132 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 SLC5A5Q92911 643 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 MTMR9Q96QG7 549 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 RIT2Q99578 217 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 ZNF577Q9BSK1 485 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 HMX1Q9NP08 348 aaPredicted RBP13.11□□□□□ -0.31
SCN9A-204ENST00000452182 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 CEP131Q9UPN4 1083 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms