RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859		Q9Y3F1	56 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	PTPRS	Q13332	1948 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CCDC69	A6NI79	296 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CYTH3	O43739	400 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CD4	P01730	458 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CSF2RA	P15509	400 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	COL9A1	P20849	921 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	MCM5	P33992	734 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CCL23	P55773	120 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	PURA	Q00577	322 aa	Known RBP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	TROAP	Q12815	778 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	STXBP2	Q15833	593 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	BRDT	Q58F21	947 aa	Predicted RBP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	BMP2KL	Q5H9B9	411 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	ZNF697	Q5TEC3	545 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	MFSD5	Q6N075	450 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CTCFL	Q8NI51	663 aa	Predicted RBP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	IGDCC4	Q8TDY8	1250 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	AFG1L	Q8WV93	481 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	MTMR8	Q96EF0	704 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CCDC136	Q96JN2	1154 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	MTG1	Q9BT17	334 aa	Predicted RBP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	HIPK3	Q9H422	1215 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	TRMT13	Q9NUP7	481 aa	Known RBP	10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	MRVI1	Q9Y6F6	885 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	CDH23	Q9H251	3354 aa		10.05	□□□□□ -0.8
RFX3-209	ENST00000451859	PRUNE2	Q8WUY3	3088 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	LOXHD1	Q8IVV2	1947 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	SH2B2	O14492	632 aa	Predicted RBP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	NKRF	O15226	690 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	CDC45	O75419	566 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	DDAH1	O94760	285 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	PLEKHA8P1	O95397	391 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	GH1	P01241	217 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	NR3C2	P08235	984 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	CYP2C9	P11712	490 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	HSD17B4	P51659	736 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	PPIG	Q13427	754 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	NBPF20	Q3BBV1	942 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	CMTR1	Q8N1G2	835 aa	Known RBP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	CCDC82	Q8N4S0	544 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	TMEM199	Q8N511	208 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	SLC43A3	Q8NBI5	491 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	IL31RA	Q8NI17	732 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	TCEANC2	Q96MN5	208 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	IWS1	Q96ST2	819 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	NOC4L	Q9BVI4	516 aa	Known RBP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	RIOX1	Q9H6W3	641 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	MTMR10	Q9NXD2	777 aa		10.04	□□□□□ -0.8
RFX3-209	ENST00000451859	PNMA6F	A0A0J9YX94	578 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	hCG_1642624	A0A1W2PR95	340 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	POLR2M	P0CAP2	368 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	KIF5B	P33176	963 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	ARHGAP1	Q07960	439 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	NECTIN1	Q15223	517 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	CCDC62	Q6P9F0	684 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	ZNF365	Q70YC5	407 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	MICU3	Q86XE3	530 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	RRP36	Q96EU6	259 aa	Known RBP	10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	SCLY	Q96I15	445 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	GUCD1	Q96NT3	240 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	PDCD2L	Q9BRP1	358 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	WNT8A	Q9H1J5	351 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	SEC63	Q9UGP8	760 aa	Known RBP	10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	PCDHGA10	Q9Y5H3	936 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	WDR81	Q562E7	1941 aa		10.03	□□□□□ -0.8
RFX3-209	ENST00000451859	UNC80	Q8N2C7	3258 aa		10.02	□□□□□ -0.8
RFX3-209	ENST00000451859		A6NJR5	290 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	EIF3J	O75822	258 aa	Known RBP	10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	MMP3	P08254	477 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	ZNF286B	P0CG31	522 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	CCND2	P30279	289 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	TRAF1	Q13077	416 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	PGM5	Q15124	567 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	TMEM240	Q5SV17	173 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	RNF20	Q5VTR2	975 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	C16orf59	Q7L2K0	433 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	TMEM87B	Q96K49	555 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	DDX41	Q9UJV9	622 aa	Known RBP	10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	NOD1	Q9Y239	953 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	SLC12A7	Q9Y666	1083 aa		10.02	□□□□□ -0.81
RFX3-209	ENST00000451859	MYH9	P35579	1960 aa	Known RBP	10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	MICAL3	Q7RTP6	2002 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	GRXCR1	A8MXD5	290 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	KPNA6	O60684	536 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	SMAD3	P84022	425 aa	Known RBP	10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	OTOP2	Q7RTS6	562 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	DEFB128	Q7Z7B8	93 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	LAPTM4B	Q86VI4	370 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	DHX37	Q8IY37	1157 aa	Known RBP	10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	SRBD1	Q8N5C6	995 aa	Known RBP	10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	SLC17A8	Q8NDX2	589 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	SMARCC2	Q8TAQ2	1214 aa		10.01	□□□□□ -0.81
RFX3-209	ENST00000451859	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms