RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 HDAC11Q96DB2 347 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 DRC3Q9H069 523 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SEPT10Q9P0V9 454 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PNMA2Q9UL42 364 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PCDHA13Q9Y5I0 950 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ARAP3Q8WWN8 1544 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 M0QZ92 97 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MFAP3LO75121 409 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MT-ND3P03897 115 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 TMOD1P28289 359 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ICA1Q05084 483 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 GRM1Q13255 1194 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 GPATCH4Q5T3I0 446 aaKnown RBP8.43□□□□□ -1.06
NEDD9-204ENST00000448183 TADA2BQ86TJ2 420 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MCF2L2Q86YR7 1114 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 LRRC43Q8N309 656 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 CCHCR1Q8TD31 782 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 N4BP2L2Q92802 583 aaPredicted RBP8.43□□□□□ -1.06
NEDD9-204ENST00000448183 FAM81BQ96LP2 452 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 AMNQ9BXJ7 453 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 A6NJR5 290 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 CCDC188H7C350 402 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 HNRNPDLO14979 420 aaKnown RBP8.43□□□□□ -1.06
NEDD9-204ENST00000448183 LARGE1O95461 756 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 PHKG2P15735 406 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 PIK3CAP42336 1068 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 STX1BP61266 288 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 SNX1Q13596 522 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 CERKLQ49MI3 558 aaPredicted RBP8.43□□□□□ -1.06
NEDD9-204ENST00000448183 C6orf118Q5T5N4 469 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 RFX6Q8HWS3 928 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 CXorf38Q8TB03 319 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 RASGRP4Q8TDF6 673 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MLXIPQ9HAP2 919 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MYO5CQ9NQX4 1742 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 LRRIQ4A6NIV6 560 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MAP3K7O43318 606 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ADORA1P30542 326 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ASPRV1Q53RT3 343 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ZMYND12Q9H0C1 365 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.43□□□□□ -1.062e-11■■□□□ 11.8
NEDD9-204ENST00000448183 SPATA31E1Q6ZUB1 1445 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 UBAP1LF5GYI3 381 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 SEMA3EO15041 775 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 LRRN2O75325 713 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 BTDP43251 543 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 CHRNDQ07001 517 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ADCY2Q08462 1091 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 POLA2Q14181 598 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 GLE1Q53GS7 698 aaKnown RBP8.43□□□□□ -1.06
NEDD9-204ENST00000448183 METTL13Q8N6R0 699 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 NCAPGQ9BPX3 1015 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 MED10Q9BTT4 135 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 NDST4Q9H3R1 872 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ANGPTL2Q9UKU9 493 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 PCDHB4Q9Y5E5 795 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 ZFYVE16Q7Z3T8 1539 aa8.43□□□□□ -1.06
NEDD9-204ENST00000448183 EXOC1LA0A1B0GW35 172 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 H0YIN7 160 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 CHUKO15111 745 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 GFPT2O94808 682 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 POLE2P56282 527 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PHEXP78562 749 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 SLC7A5Q01650 507 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 DR1Q01658 176 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PLCB4Q15147 1175 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 DACT3Q96B18 629 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PUS3Q9BZE2 481 aaKnown RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 MRPL47Q9HD33 250 aaKnown RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 NOP53Q9NZM5 478 aaKnown RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 TBK1Q9UHD2 729 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 SH2B2O14492 632 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 CPP00450 1065 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 CA4P22748 312 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PSMD2Q13200 908 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 SEPT2Q15019 361 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 NECTIN1Q15223 517 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 KRT31Q15323 416 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 CC2D1AQ6P1N0 951 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 CCDC17Q96LX7 622 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 IPO11Q9UI26 975 aaKnown RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 NFU1Q9UMS0 254 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 TMEM232C9JQI7 657 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 MCF2LO15068 1137 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ESRRAP11474 423 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ATP2B4P23634 1241 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 POLGP54098 1239 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ICE2Q659A1 982 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 NUGGCQ68CJ6 796 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 RAPH1Q70E73 1250 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 TBC1D1Q86TI0 1168 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 TBCKQ8TEA7 893 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PAGE5Q96GU1 130 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 GREM2Q9H772 168 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 SUGCTQ9HAC7 445 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 SMYD2Q9NRG4 433 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 GCNT4Q9P109 453 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 hCG_1984214I3L0E3 225 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 M0R2C6 588 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ADD2P35612 726 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms