RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF865P0CJ78 1059 aaPredicted RBP17.89■□□□□ 0.45
USP40-206ENST00000443711 ARP10275 920 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 TGFB3P10600 412 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 CACNB2Q08289 660 aaPredicted RBP17.89■□□□□ 0.45
USP40-206ENST00000443711 NBR1Q14596 966 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 TTLL4Q14679 1199 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 PDGFCQ9NRA1 345 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 KCNH7Q9NS40 1196 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 CEP131Q9UPN4 1083 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 MRVI1Q9Y6F6 885 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 TBX3O15119 743 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 SLC37A4O43826 429 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 MARCH6O60337 910 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 BAG4O95429 457 aaKnown RBP17.88■□□□□ 0.45
USP40-206ENST00000443711 BMP15O95972 392 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 INHAP05111 366 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 CYBAP13498 195 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 PRKAR2AP13861 404 aaKnown RBP17.88■□□□□ 0.45
USP40-206ENST00000443711 TRIM32Q13049 653 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 CCDC144BQ3MJ40 725 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 FOXD4L6Q3SYB3 417 aaPredicted RBP17.88■□□□□ 0.45
USP40-206ENST00000443711 SLC9C1Q4G0N8 1177 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 ANO1Q5XXA6 986 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 FOXD4L3Q6VB84 417 aaPredicted RBP17.88■□□□□ 0.45
USP40-206ENST00000443711 LENG9Q96B70 501 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 TFIP11Q9UBB9 837 aaKnown RBP17.88■□□□□ 0.45
USP40-206ENST00000443711 FAM184BQ9ULE4 1060 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 TCHHQ07283 1943 aa17.88■□□□□ 0.45
USP40-206ENST00000443711 MSH4O15457 936 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 TXNP10599 105 aaKnown RBP17.87■□□□□ 0.45
USP40-206ENST00000443711 SEMA3FQ13275 785 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 SF3A1Q15459 793 aaKnown RBP17.87■□□□□ 0.45
USP40-206ENST00000443711 CALCRLQ16602 461 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 MAP3K21Q5TCX8 1036 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 CCDC62Q6P9F0 684 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 POTEDQ86YR6 584 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 TRPV1Q8NER1 839 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 SH3TC2Q8TF17 1288 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 FAM20AQ96MK3 541 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 USP28Q96RU2 1077 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 ZNF577Q9BSK1 485 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 AGO4Q9HCK5 861 aaKnown RBP17.87■□□□□ 0.45
USP40-206ENST00000443711 CFAP45Q9UL16 551 aa17.87■□□□□ 0.45
USP40-206ENST00000443711 LAD1O00515 517 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 CNGA1P29973 690 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 ADCYAP1R1P41586 468 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 TNFAIP2Q03169 654 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 CEBPZQ03701 1054 aaKnown RBP17.86■□□□□ 0.45
USP40-206ENST00000443711 DNM1Q05193 864 aaKnown RBP17.86■□□□□ 0.45
USP40-206ENST00000443711 PTGDRQ13258 359 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 SLFN12Q8IYM2 578 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 GIMAP8Q8ND71 665 aaPredicted RBP17.86■□□□□ 0.45
USP40-206ENST00000443711 SENP7Q9BQF6 1050 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 HMX1Q9NP08 348 aaPredicted RBP17.86■□□□□ 0.45
USP40-206ENST00000443711 KCNMB3Q9NPA1 279 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 TBC1D22BQ9NU19 505 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 POLR3EQ9NVU0 708 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 DDX41Q9UJV9 622 aaKnown RBP17.86■□□□□ 0.45
USP40-206ENST00000443711 CLIC4Q9Y696 253 aa17.86■□□□□ 0.45
USP40-206ENST00000443711 IPO5O00410 1097 aaKnown RBP17.85■□□□□ 0.45
USP40-206ENST00000443711 NKRFO15226 690 aaKnown RBP eCLIP17.85■□□□□ 0.45
USP40-206ENST00000443711 NFASCO94856 1347 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 OR52Z1P0C646 297 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 AKR1A1P14550 325 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 NASPP49321 788 aaPredicted RBP17.85■□□□□ 0.45
USP40-206ENST00000443711 KRT85P78386 507 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 NEDD9Q14511 834 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 LY6KQ17RY6 165 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 DUSP28Q4G0W2 176 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 C4orf32Q8N8J7 132 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 ETNPPLQ8TBG4 499 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 SLC5A5Q92911 643 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 MTMR9Q96QG7 549 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 RIT2Q99578 217 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 SDF4Q9BRK5 362 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 TMEM60Q9H2L4 133 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 PKD2L1Q9P0L9 805 aa17.85■□□□□ 0.45
USP40-206ENST00000443711 SEPT4O43236 478 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 ATP9AO75110 1047 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 ARIH2O95376 493 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 KCNA2P16389 499 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 SMPD1P17405 629 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 NCLP19338 710 aaKnown RBP17.84■□□□□ 0.45
USP40-206ENST00000443711 CCND3P30281 292 aaPredicted RBP17.84■□□□□ 0.45
USP40-206ENST00000443711 ATP2C1P98194 919 aaPredicted RBP17.84■□□□□ 0.45
USP40-206ENST00000443711 SP2Q02086 613 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 SLC39A14Q15043 492 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 STK38Q15208 465 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 DHX37Q8IY37 1157 aaKnown RBP17.84■□□□□ 0.45
USP40-206ENST00000443711 HAS1Q92839 578 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 TNPO1Q92973 898 aaKnown RBP17.84■□□□□ 0.45
USP40-206ENST00000443711 UIMC1Q96RL1 719 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 FTOQ9C0B1 505 aaKnown RBP eCLIP17.84■□□□□ 0.45
USP40-206ENST00000443711 DOCK5Q9H7D0 1870 aa17.84■□□□□ 0.45
USP40-206ENST00000443711 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.83■□□□□ 0.44
USP40-206ENST00000443711 GAS7O60861 476 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 YEATS4O95619 227 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 GGPS1O95749 300 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 GH1P01241 217 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 UBA1P22314 1058 aaKnown RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms