RNA–Protein interactions for RNA: ENST00000442515.5

LINC00642-202, long intergenic non-protein coding RNA 642, humanhuman

TSL 3 BASIC

Gene LINC00642, Length 670 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-202ENST00000442515 SMAD4Q13485 552 aaKnown RBP16.4■□□□□ 0.22
LINC00642-202ENST00000442515 HIC1Q14526 733 aa16.4■□□□□ 0.22
LINC00642-202ENST00000442515 TOP1MTQ969P6 601 aa16.4■□□□□ 0.22
LINC00642-202ENST00000442515 PBXIP1Q96AQ6 731 aa16.4■□□□□ 0.22
LINC00642-202ENST00000442515 STXBP3O00186 592 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 UPP2O95045 317 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 HYAL1Q12794 435 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 PKN1Q16512 942 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 TRIM67Q6ZTA4 783 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 SUGP1Q8IWZ8 645 aaKnown RBP16.39■□□□□ 0.21
LINC00642-202ENST00000442515 DHX37Q8IY37 1157 aaKnown RBP16.39■□□□□ 0.21
LINC00642-202ENST00000442515 EMID1Q96A84 441 aaPredicted RBP16.39■□□□□ 0.21
LINC00642-202ENST00000442515 TMEM47Q9BQJ4 181 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 FAM86C1Q9NVL1 165 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 DDX19BQ9UMR2 479 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 ZDBF2Q9HCK1 2354 aa16.39■□□□□ 0.21
LINC00642-202ENST00000442515 VPS13AQ96RL7 3174 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 FOXP2O15409 715 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 PDHBP11177 359 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 CTNNB1P35222 781 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 FOXK2Q01167 660 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 USH1GQ495M9 461 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 SERINC5Q86VE9 423 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 RGS22Q8NE09 1264 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 PPTC7Q8NI37 304 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 GPATCH3Q96I76 525 aa16.38■□□□□ 0.21
LINC00642-202ENST00000442515 IFIH1Q9BYX4 1025 aaKnown RBP16.38■□□□□ 0.21
LINC00642-202ENST00000442515 DDX41Q9UJV9 622 aaKnown RBP16.38■□□□□ 0.21
LINC00642-202ENST00000442515 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 CCER2I3L3R5 266 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 TOP1P11387 765 aaKnown RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 GTF2F1P35269 517 aaKnown RBP eCLIP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 SYTL5Q8TDW5 730 aaPredicted RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 NSUN6Q8TEA1 469 aaKnown RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 SEPT8Q92599 483 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 TAAR1Q96RJ0 339 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 C11orf84Q9BUA3 381 aaPredicted RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 LMAN2LQ9H0V9 348 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 ALG13Q9NP73 1137 aaKnown RBP16.37■□□□□ 0.21
LINC00642-202ENST00000442515 COL20A1Q9P218 1284 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 CD207Q9UJ71 328 aa16.37■□□□□ 0.21
LINC00642-202ENST00000442515 ZFHX2Q9C0A1 2572 aaPredicted RBP16.36■□□□□ 0.21
LINC00642-202ENST00000442515 CACNA1HO95180 2353 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 C5orf67F2Z3F1 127 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 GRM6O15303 877 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 ORC4O43929 436 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 CSPG5O95196 566 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 LINC00271P0C7V0 271 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 HOXD8P13378 290 aaPredicted RBP16.36■□□□□ 0.21
LINC00642-202ENST00000442515 ZNF543Q08ER8 600 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 LAMC2Q13753 1193 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 STXBP2Q15833 593 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 OSBPL7Q9BZF2 842 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 MRVI1Q9Y6F6 885 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 MICAL3Q7RTP6 2002 aa16.36■□□□□ 0.21
LINC00642-202ENST00000442515 LINC01565O15544 149 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 CTSHP09668 335 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 MS4A1P11836 297 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 ZMYM1Q5SVZ6 1142 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 FBXL6Q8N531 539 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 FIBCD1Q8N539 461 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 TBC1D5Q92609 795 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 IWS1Q96ST2 819 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 RMDN3Q96TC7 470 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 IGFLR1Q9H665 355 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 MYO7AQ13402 2215 aa16.35■□□□□ 0.21
LINC00642-202ENST00000442515 CACNA1AO00555 2505 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 RB1P06400 928 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 SNHG28P0DPA3 235 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 VCPP55072 806 aaKnown RBP16.34■□□□□ 0.21
LINC00642-202ENST00000442515 ZXDAP98168 799 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 IL17RAQ96F46 866 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 FSD1Q9BTV5 496 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 TOMM22Q9NS69 142 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 ANAPC4Q9UJX5 808 aa16.34■□□□□ 0.21
LINC00642-202ENST00000442515 SORBS3O60504 671 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 EYA4O95677 639 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 FGRP09769 529 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 EIF2AK2P19525 551 aaKnown RBP16.33■□□□□ 0.2
LINC00642-202ENST00000442515 BMPR1AP36894 532 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 NDUFV1P49821 464 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 RRP12Q5JTH9 1297 aaKnown RBP16.33■□□□□ 0.2
LINC00642-202ENST00000442515 ATP6V0A1Q93050 837 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 MSLNLQ96KJ4 702 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 CPVLQ9H3G5 476 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 RWDD3Q9Y3V2 267 aa16.33■□□□□ 0.2
LINC00642-202ENST00000442515 C17orf102A2RUQ5 167 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 LOC730098B7Z3J9 87 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 PPFIA4O75335 1185 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 EIF3JO75822 258 aaKnown RBP16.32■□□□□ 0.2
LINC00642-202ENST00000442515 ABCB11O95342 1321 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 MMP1P03956 469 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 HOXC8P31273 242 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 CDC37Q16543 378 aaPredicted RBP16.32■□□□□ 0.2
LINC00642-202ENST00000442515 HSDL1Q3SXM5 330 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 VPS53Q5VIR6 699 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 ARHGEF16Q5VV41 709 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 ADGRA3Q8IWK6 1321 aa16.32■□□□□ 0.2
LINC00642-202ENST00000442515 ATOH1Q92858 354 aaPredicted RBP16.32■□□□□ 0.2
LINC00642-202ENST00000442515 APBB2Q92870 758 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms