RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 PCDHA8Q9Y5H6 950 aa27.56■■■□□ 2
CPNE1-217ENST00000439669 SMCO2A6NFE2 343 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 FIBPO43427 364 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 B4GALT4O60513 344 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 PPFIA3O75145 1194 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 TIMP1P01033 207 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 ANAPC15P60006 121 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 SP2Q02086 613 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 NBPF20Q3BBV1 942 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 PPP1R13LQ8WUF5 828 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 SPATA33Q96N06 139 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 ALDH8A1Q9H2A2 487 aaPredicted RBP27.55■■■□□ 2
CPNE1-217ENST00000439669 MLXIPQ9HAP2 919 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 SCN10AQ9Y5Y9 1956 aa27.55■■■□□ 2
CPNE1-217ENST00000439669 ICAM3P32942 547 aa27.54■■■□□ 2
CPNE1-217ENST00000439669 FPGSQ05932 587 aa27.54■■■□□ 2
CPNE1-217ENST00000439669 MYSM1Q5VVJ2 828 aa27.54■■■□□ 2
CPNE1-217ENST00000439669 NLRX1Q86UT6 975 aa27.54■■■□□ 2
CPNE1-217ENST00000439669 SLC26A6Q9BXS9 759 aa27.54■■■□□ 2
CPNE1-217ENST00000439669 SPATA31C2B4DYI2 1134 aa27.53■■■□□ 2
CPNE1-217ENST00000439669 PRPF3O43395 683 aaKnown RBP27.53■■■□□ 2
CPNE1-217ENST00000439669 GLT8D2Q9H1C3 349 aa27.53■■■□□ 2
CPNE1-217ENST00000439669 TRMT13Q9NUP7 481 aaKnown RBP27.53■■■□□ 2
CPNE1-217ENST00000439669 MYH7BA7E2Y1 1941 aa27.53■■■□□ 2
CPNE1-217ENST00000439669 ZNF286BP0CG31 522 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 STK3Q13188 491 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 SEMA3FQ13275 785 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 NTRK3Q16288 839 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 HSDL1Q3SXM5 330 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 NFRKBQ6P4R8 1299 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 TEX2Q8IWB9 1127 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 ZNF274Q96GC6 653 aaPredicted RBP27.52■■■□□ 2
CPNE1-217ENST00000439669 PGBD1Q96JS3 809 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 RNF26Q9BY78 433 aaPredicted RBP27.52■■■□□ 2
CPNE1-217ENST00000439669 HIPK3Q9H422 1215 aa27.52■■■□□ 2
CPNE1-217ENST00000439669 CPLX1O14810 134 aa27.51■■□□□ 1.99
CPNE1-217ENST00000439669 IFNAR1P17181 557 aa27.51■■□□□ 1.99
CPNE1-217ENST00000439669 NEDD9Q14511 834 aa27.51■■□□□ 1.99
CPNE1-217ENST00000439669 PKN1Q16512 942 aa27.51■■□□□ 1.99
CPNE1-217ENST00000439669 CCDC12Q8WUD4 166 aaPredicted RBP27.51■■□□□ 1.99
CPNE1-217ENST00000439669 ANO3Q9BYT9 981 aa27.51■■□□□ 1.99
CPNE1-217ENST00000439669 NOP56O00567 594 aaKnown RBP27.5■■□□□ 1.99
CPNE1-217ENST00000439669 SOX1O00570 391 aaPredicted RBP27.5■■□□□ 1.99
CPNE1-217ENST00000439669 SLC34A2O95436 690 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 FOSP01100 380 aaPredicted RBP27.5■■□□□ 1.99
CPNE1-217ENST00000439669 SUPT20HL2P0C7V6 817 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 CYP2C18P33260 490 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 MFSD5Q6N075 450 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 KAT2BQ92831 832 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 KATNAL1Q9BW62 490 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 TMEM260Q9NX78 707 aa27.5■■□□□ 1.99
CPNE1-217ENST00000439669 SEC24BO95487 1268 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 PTPN11Q06124 597 aaPredicted RBP27.49■■□□□ 1.99
CPNE1-217ENST00000439669 AP3B2Q13367 1082 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 SHHQ15465 462 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 LRIT3Q3SXY7 679 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 C9orf50Q5SZB4 431 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 CYFIP1Q7L576 1253 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 TRIM22Q8IYM9 498 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 TMEM199Q8N511 208 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 GPRASP2Q96D09 838 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 CDHR1Q96JP9 859 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 BCAS3Q9H6U6 928 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 NOD1Q9Y239 953 aa27.49■■□□□ 1.99
CPNE1-217ENST00000439669 ESYT2A0FGR8 921 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 PPFIA4O75335 1185 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 F2P00734 622 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 CYP2C9P11712 490 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 HOXD8P13378 290 aaPredicted RBP27.48■■□□□ 1.99
CPNE1-217ENST00000439669 ITGB5P18084 799 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 PSEN2P49810 448 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 EPHB4P54760 987 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 CPLX2Q6PUV4 134 aaKnown RBP27.48■■□□□ 1.99
CPNE1-217ENST00000439669 METTL7BQ6UX53 244 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 LRCH3Q96II8 777 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 ALG1Q9BT22 464 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 NOC4LQ9BVI4 516 aaKnown RBP27.48■■□□□ 1.99
CPNE1-217ENST00000439669 C6orf50Q9HD87 102 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 UBIAD1Q9Y5Z9 338 aa27.48■■□□□ 1.99
CPNE1-217ENST00000439669 RANBP2P49792 3224 aaKnown RBP27.47■■□□□ 1.99
CPNE1-217ENST00000439669 UMODL1Q5DID0 1318 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 CLK2P49760 499 aaKnown RBP27.47■■□□□ 1.99
CPNE1-217ENST00000439669 SP4Q02446 784 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 SSRP1Q08945 709 aaKnown RBP27.47■■□□□ 1.99
CPNE1-217ENST00000439669 PPIGQ13427 754 aaKnown RBP eCLIP27.47■■□□□ 1.991e-11■■□□□ 11.7
CPNE1-217ENST00000439669 MTMR1Q13613 665 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 MFSD10Q14728 455 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 JAKMIP3Q5VZ66 844 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 CCDC148Q8NFR7 591 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 SENP7Q9BQF6 1050 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 ZMYND12Q9H0C1 365 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 PKD2L1Q9P0L9 805 aa27.47■■□□□ 1.99
CPNE1-217ENST00000439669 CSF2RAP15509 400 aa27.46■■□□□ 1.99
CPNE1-217ENST00000439669 KIAA0753Q2KHM9 967 aa27.46■■□□□ 1.99
CPNE1-217ENST00000439669 C7orf31Q8N865 590 aa27.46■■□□□ 1.99
CPNE1-217ENST00000439669 GIMAP8Q8ND71 665 aaPredicted RBP27.46■■□□□ 1.99
CPNE1-217ENST00000439669 JADE2Q9NQC1 790 aa27.46■■□□□ 1.99
CPNE1-217ENST00000439669 VPS54Q9P1Q0 977 aa27.46■■□□□ 1.99
CPNE1-217ENST00000439669 GNA11P29992 359 aa27.45■■□□□ 1.98
CPNE1-217ENST00000439669 CCL23P55773 120 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms