RNA–Protein interactions for RNA: ENST00000438801.1

HMGB1P18-201, Transcript of high mobility group box 1 pseudogene 18, humanhuman

BASIC

Gene HMGB1P18, Length 619 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P18-201ENST00000438801 CCDC103Q8IW40 242 aa4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 Q8N1Y9 231 aa4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 DIO2Q92813 273 aa4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 RBM15Q96T37 977 aaKnown RBP eCLIP4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 TMEFF2Q9UIK5 374 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 X6R8D5 127 aa4.84□□□□□ -1.63
HMGB1P18-201ENST00000438801 RAPGEF6Q8TEU7 1601 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 ARNTLO00327 626 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 SMAD7O15105 426 aaKnown RBP4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 MYO1BO43795 1136 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 ITGAVP06756 1048 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 HOXC12P31275 282 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 BCL6P41182 706 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 ECI1P42126 302 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 ITGA1P56199 1179 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 KIAA2012Q0VF49 1180 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 KCNAB2Q13303 367 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 SV2CQ496J9 727 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 FAM26FQ5R3K3 315 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 PRR31Q5SQ13 230 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 NLRP10Q86W26 655 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 FAM126BQ8IXS8 530 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 TRMT2BQ96GJ1 504 aaKnown RBP4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 TMEM169Q96HH4 297 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 ACTR10Q9NZ32 417 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 LRP2BPQ9P2M1 347 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 MYRFQ9Y2G1 1151 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 MRVI1Q9Y6F6 885 aa4.83□□□□□ -1.64
HMGB1P18-201ENST00000438801 MAPKBP1O60336 1514 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 MROH6A6NGR9 719 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 UNCXA6NJT0 531 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 B2RBV5 119 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 MEFVO15553 781 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 CPP00450 1065 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 PLATP00750 562 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 SCG5P05408 212 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 SNRPB2P08579 225 aaKnown RBP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 STAT5AP42229 794 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 ADAM17P78536 824 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 PUM1Q14671 1186 aaKnown RBP eCLIP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 PRSS53Q2L4Q9 553 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 TBC1D10BQ4KMP7 808 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 TNNI3KQ59H18 835 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 LARP1BQ659C4 914 aaKnown RBP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 MCTP2Q6DN12 878 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 FAM124AQ86V42 546 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 ZNF227Q86WZ6 799 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 FAM178BQ8IXR5 827 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 LGI4Q8N135 537 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 RCBTB1Q8NDN9 531 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 CAPN10Q9HC96 672 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 NGRNQ9NPE2 291 aaKnown RBP4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 SMPD4Q9NXE4 827 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 INVSQ9Y283 1065 aa4.82□□□□□ -1.64
HMGB1P18-201ENST00000438801 DDX3XO00571 662 aaKnown RBP eCLIP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 SUSD5O60279 629 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 SSBP05455 408 aaKnown RBP eCLIP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 NKX3-2P78367 333 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 SF1Q15637 639 aaKnown RBP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 CR1LQ2VPA4 569 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 ACBD5Q5T8D3 534 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 BORAQ6PGQ7 559 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 TXNDC5Q8NBS9 432 aaKnown RBP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 KREMEN2Q8NCW0 462 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 CCDC140Q96MF4 163 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 YIPF4Q9BSR8 244 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 TMPRSS5Q9H3S3 457 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 FBXL7Q9UJT9 491 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 ZNF652Q9Y2D9 606 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 COA3Q9Y2R0 106 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 MADDQ8WXG6 1647 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 HMGXB3Q12766 1538 aa4.81□□□□□ -1.64
HMGB1P18-201ENST00000438801 H7BY64 318 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 HGSO14964 777 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 DDAH1O94760 285 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 LTBRP36941 435 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 KCNJ6P48051 423 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 ADAM9Q13443 819 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 LSAMPQ13449 338 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 TESK1Q15569 626 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 CHRNA2Q15822 529 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 VPS37DQ86XT2 251 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 PPIL6Q8IXY8 311 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 LOXL4Q96JB6 756 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 CHAMP1Q96JM3 812 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 SAMD11Q96NU1 681 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 PCDHA2Q9Y5H9 948 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 IFT140Q96RY7 1462 aa4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 PPRC1Q5VV67 1664 aaKnown RBP4.8□□□□□ -1.64
HMGB1P18-201ENST00000438801 ZNF536O15090 1300 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 MYO15BQ96JP2 1530 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 LCP1P13796 627 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 ZNF28P17035 718 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 GFRA1P56159 465 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 FXNQ16595 210 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 PRAMEF18Q5VWM3 479 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 STEAP3Q658P3 488 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 CPZQ66K79 652 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 TTC9BQ8N6N2 239 aa4.79□□□□□ -1.64
HMGB1P18-201ENST00000438801 TOE1Q96GM8 510 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms