RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 BICD2Q8TD16 824 aa21.33■■□□□ 1.01
SHH-203ENST00000435425 POLR3EQ9NVU0 708 aa21.33■■□□□ 1.01
SHH-203ENST00000435425 STK36Q9NRP7 1315 aa21.32■■□□□ 1
SHH-203ENST00000435425 SPATA31C2B4DYI2 1134 aa21.32■■□□□ 1
SHH-203ENST00000435425 FIBPO43427 364 aa21.32■■□□□ 1
SHH-203ENST00000435425 JAK2O60674 1132 aa21.32■■□□□ 1
SHH-203ENST00000435425 TGFB3P10600 412 aa21.32■■□□□ 1
SHH-203ENST00000435425 UBA1P22314 1058 aaKnown RBP21.32■■□□□ 1
SHH-203ENST00000435425 CHMP4BP1P59074 171 aa21.32■■□□□ 1
SHH-203ENST00000435425 PSMC6P62333 389 aa21.32■■□□□ 1
SHH-203ENST00000435425 ST3GAL1Q11201 340 aa21.32■■□□□ 1
SHH-203ENST00000435425 SEMA3FQ13275 785 aa21.32■■□□□ 1
SHH-203ENST00000435425 LAMC2Q13753 1193 aa21.32■■□□□ 1
SHH-203ENST00000435425 TEX2Q8IWB9 1127 aa21.32■■□□□ 1
SHH-203ENST00000435425 NSUN7Q8NE18 718 aaKnown RBP21.32■■□□□ 1
SHH-203ENST00000435425 ZSCAN31Q96LW9 406 aaPredicted RBP21.32■■□□□ 1
SHH-203ENST00000435425 BCAS3Q9H6U6 928 aa21.32■■□□□ 1
SHH-203ENST00000435425 MLXIPQ9HAP2 919 aa21.32■■□□□ 1
SHH-203ENST00000435425 PKD2L1Q9P0L9 805 aa21.32■■□□□ 1
SHH-203ENST00000435425 PCDH10Q9P2E7 1040 aa21.32■■□□□ 1
SHH-203ENST00000435425 KCNJ14Q9UNX9 436 aa21.32■■□□□ 1
SHH-203ENST00000435425 A6NJR5 290 aa21.31■■□□□ 1
SHH-203ENST00000435425 ST18O60284 1047 aa21.31■■□□□ 1
SHH-203ENST00000435425 PQBP1O60828 265 aaKnown RBP21.31■■□□□ 1
SHH-203ENST00000435425 ITGB5P18084 799 aa21.31■■□□□ 1
SHH-203ENST00000435425 ICAM3P32942 547 aa21.31■■□□□ 1
SHH-203ENST00000435425 ZNF76P36508 570 aa21.31■■□□□ 1
SHH-203ENST00000435425 FOSBP53539 338 aa21.31■■□□□ 1
SHH-203ENST00000435425 CELF3Q5SZQ8 465 aaKnown RBP21.31■■□□□ 1
SHH-203ENST00000435425 ALG1Q9BT22 464 aa21.31■■□□□ 1
SHH-203ENST00000435425 GJB4Q9NTQ9 266 aa21.31■■□□□ 1
SHH-203ENST00000435425 UBIAD1Q9Y5Z9 338 aa21.31■■□□□ 1
SHH-203ENST00000435425 ELP1O95163 1332 aa21.3■■□□□ 1
SHH-203ENST00000435425 A0A0U1RQG5 324 aaPredicted RBP21.3■■□□□ 1
SHH-203ENST00000435425 CABYRO75952 493 aa21.3■■□□□ 1
SHH-203ENST00000435425 MMP3P08254 477 aa21.3■■□□□ 1
SHH-203ENST00000435425 FDPSP14324 419 aaKnown RBP21.3■■□□□ 1
SHH-203ENST00000435425 SREBF1P36956 1147 aa21.3■■□□□ 1
SHH-203ENST00000435425 ARHGAP4P98171 946 aa21.3■■□□□ 1
SHH-203ENST00000435425 PURAQ00577 322 aaKnown RBP21.3■■□□□ 1
SHH-203ENST00000435425 TLE2Q04725 743 aa21.3■■□□□ 1
SHH-203ENST00000435425 SNX17Q15036 470 aa21.3■■□□□ 1
SHH-203ENST00000435425 PRPF38BQ5VTL8 546 aaKnown RBP21.3■■□□□ 1
SHH-203ENST00000435425 MYSM1Q5VVJ2 828 aa21.3■■□□□ 1
SHH-203ENST00000435425 MCTP2Q6DN12 878 aa21.3■■□□□ 1
SHH-203ENST00000435425 PPP1R13LQ8WUF5 828 aa21.3■■□□□ 1
SHH-203ENST00000435425 WASF1Q92558 559 aa21.3■■□□□ 1
SHH-203ENST00000435425 SPATA33Q96N06 139 aa21.3■■□□□ 1
SHH-203ENST00000435425 MXRA8Q9BRK3 442 aa21.3■■□□□ 1
SHH-203ENST00000435425 JADE2Q9NQC1 790 aa21.3■■□□□ 1
SHH-203ENST00000435425 PRDM5Q9NQX1 630 aaPredicted RBP21.3■■□□□ 1
SHH-203ENST00000435425 PCDHA4Q9UN74 947 aa21.3■■□□□ 1
SHH-203ENST00000435425 XBP1P17861 261 aa21.29■■□□□ 1
SHH-203ENST00000435425 SP4Q02446 784 aa21.29■■□□□ 1
SHH-203ENST00000435425 MTMR1Q13613 665 aa21.29■■□□□ 1
SHH-203ENST00000435425 ITGA7Q13683 1181 aa21.29■■□□□ 1
SHH-203ENST00000435425 NEDD9Q14511 834 aa21.29■■□□□ 1
SHH-203ENST00000435425 CYFIP1Q7L576 1253 aa21.29■■□□□ 1
SHH-203ENST00000435425 BLIDQ8IZY5 108 aa21.29■■□□□ 1
SHH-203ENST00000435425 CYP2W1Q8TAV3 490 aa21.29■■□□□ 1
SHH-203ENST00000435425 GPRASP2Q96D09 838 aa21.29■■□□□ 1
SHH-203ENST00000435425 MTG1Q9BT17 334 aaPredicted RBP21.29■■□□□ 1
SHH-203ENST00000435425 ARVCFO00192 962 aa21.28■■□□□ 1
SHH-203ENST00000435425 KPNA6O60684 536 aa21.28■■□□□ 1
SHH-203ENST00000435425 ATP9AO75110 1047 aa21.28■■□□□ 1
SHH-203ENST00000435425 DGKDQ16760 1214 aa21.28■■□□□ 1
SHH-203ENST00000435425 HSDL1Q3SXM5 330 aa21.28■■□□□ 1
SHH-203ENST00000435425 C1orf53Q5VUE5 145 aa21.28■■□□□ 1
SHH-203ENST00000435425 EMID1Q96A84 441 aaPredicted RBP21.28■■□□□ 1
SHH-203ENST00000435425 CDHR1Q96JP9 859 aa21.28■■□□□ 1
SHH-203ENST00000435425 SH2B1Q9NRF2 756 aaPredicted RBP21.28■■□□□ 1
SHH-203ENST00000435425 PPTC7Q8NI37 304 aa21.27■■□□□ 1
SHH-203ENST00000435425 UIMC1Q96RL1 719 aa21.27■■□□□ 1
SHH-203ENST00000435425 PHF20Q9BVI0 1012 aa21.27■■□□□ 1
SHH-203ENST00000435425 PRKAG2Q9UGJ0 569 aa21.27■■□□□ 1
SHH-203ENST00000435425 GRIN2DO15399 1336 aa21.27■□□□□ 0.99
SHH-203ENST00000435425 DCDC2CA8MYV0 355 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 NOP56O00567 594 aaKnown RBP21.26■□□□□ 0.99
SHH-203ENST00000435425 CD2BP2O95400 341 aaKnown RBP21.26■□□□□ 0.99
SHH-203ENST00000435425 ARP10275 920 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 CDK7P50613 346 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 CEP55Q53EZ4 464 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 FAM47CQ5HY64 1035 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 GALNT17Q6IS24 598 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 SH3RF1Q7Z6J0 888 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 KCNH7Q9NS40 1196 aa21.26■□□□□ 0.99
SHH-203ENST00000435425 CLTBP09497 229 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 ZNF286BP0CG31 522 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 KCNA2P16389 499 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 NPY5RQ15761 445 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 NBPF20Q3BBV1 942 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 METTL7BQ6UX53 244 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 PLA2G4DQ86XP0 818 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 DAGLBQ8NCG7 672 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 GIMAP8Q8ND71 665 aaPredicted RBP21.25■□□□□ 0.99
SHH-203ENST00000435425 SENP7Q9BQF6 1050 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 TELO2Q9Y4R8 837 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 MROH7Q68CQ1 1323 aa21.25■□□□□ 0.99
SHH-203ENST00000435425 FAM86B1E9PN63 330 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 TLR3O15455 904 aaKnown RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms