RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 PTPAQ15257 358 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 FOXD4L6Q3SYB3 417 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-204ENST00000434233 IQSEC1Q6DN90 963 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 TAPT1Q6NXT6 567 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 FOXD4L3Q6VB84 417 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-204ENST00000434233 SEPT14Q6ZU15 432 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 TRIB2Q92519 343 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 LENG9Q96B70 501 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 FAM20AQ96MK3 541 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 MTMR9Q96QG7 549 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 KATNBL1Q9H079 304 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 KCNH7Q9NS40 1196 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 RCOR1Q9UKL0 485 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 CNPY2Q9Y2B0 182 aa13.96□□□□□ -0.17
LINC00339-204ENST00000434233 DDX49Q9Y6V7 483 aaKnown RBP13.96□□□□□ -0.17
LINC00339-204ENST00000434233 MSH4O15457 936 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 SLC37A4O43826 429 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 NEMFO60524 1076 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 YEATS4O95619 227 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 ZNF865P0CJ78 1059 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-204ENST00000434233 CYP2C19P33261 490 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 ATP2C1P98194 919 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-204ENST00000434233 PTGDRQ13258 359 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 MTMR1Q13613 665 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 PKN2Q16513 984 aaKnown RBP13.95□□□□□ -0.18
LINC00339-204ENST00000434233 CLEC17AQ6ZS10 378 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 EEPD1Q7L9B9 569 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 CTU1Q7Z7A3 348 aaKnown RBP13.95□□□□□ -0.18
LINC00339-204ENST00000434233 SLFN12Q8IYM2 578 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 LINC00301Q8NCQ3 95 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 SLAIN1Q8ND83 568 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 SENP7Q9BQF6 1050 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 SCAND2PQ9GZW5 306 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-204ENST00000434233 KCNMB3Q9NPA1 279 aa13.95□□□□□ -0.18
LINC00339-204ENST00000434233 LRRC37A2A6NM11 1700 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 MARCH6O60337 910 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 HMGCRP04035 888 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 GRK4P32298 578 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 PRPHP41219 470 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 CEBPZQ03701 1054 aaKnown RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 SEMA3FQ13275 785 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 TTLL4Q14679 1199 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 STK38Q15208 465 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 CALCRLQ16602 461 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 PRAMEF19Q5SWL8 479 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 ARL6IP4Q66PJ3 421 aaKnown RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 POTEDQ86YR6 584 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 FBXO16Q8IX29 292 aaPredicted RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 GIMAP8Q8ND71 665 aaPredicted RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 ETNPPLQ8TBG4 499 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 SCFD2Q8WU76 684 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 HAS1Q92839 578 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 ZNF577Q9BSK1 485 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 TMEM60Q9H2L4 133 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 AGO4Q9HCK5 861 aaKnown RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 PRDM10Q9NQV6 1147 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 PDGFCQ9NRA1 345 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 TBC1D22BQ9NU19 505 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 DDX41Q9UJV9 622 aaKnown RBP13.94□□□□□ -0.18
LINC00339-204ENST00000434233 PTCH2Q9Y6C5 1203 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 MRVI1Q9Y6F6 885 aa13.94□□□□□ -0.18
LINC00339-204ENST00000434233 IPO5O00410 1097 aaKnown RBP13.93□□□□□ -0.18
LINC00339-204ENST00000434233 SPTLC2O15270 562 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 ATP9AO75110 1047 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 PPP6R2O75170 966 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 OR52Z1P0C646 297 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 TXNP10599 105 aaKnown RBP13.93□□□□□ -0.18
LINC00339-204ENST00000434233 ELNP15502 786 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 CACNB2Q08289 660 aaPredicted RBP13.93□□□□□ -0.18
LINC00339-204ENST00000434233 NEDD9Q14511 834 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 CCDC62Q6P9F0 684 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 SLC5A5Q92911 643 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 RIT2Q99578 217 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 FTOQ9C0B1 505 aaKnown RBP eCLIP13.93□□□□□ -0.18
LINC00339-204ENST00000434233 RNF216Q9NWF9 866 aaPredicted RBP13.93□□□□□ -0.18
LINC00339-204ENST00000434233 FAM184BQ9ULE4 1060 aa13.93□□□□□ -0.18
LINC00339-204ENST00000434233 NFASCO94856 1347 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 NKRFO15226 690 aaKnown RBP eCLIP13.92□□□□□ -0.18
LINC00339-204ENST00000434233 DHX15O43143 795 aaKnown RBP13.92□□□□□ -0.18
LINC00339-204ENST00000434233 PSMD10O75832 226 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 CYBAP13498 195 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 KCNA2P16389 499 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 NCLP19338 710 aaKnown RBP13.92□□□□□ -0.18
LINC00339-204ENST00000434233 TXKP42681 527 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 SP2Q02086 613 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 PDIA5Q14554 519 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 LY6KQ17RY6 165 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 CCDC144BQ3MJ40 725 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 DUSP28Q4G0W2 176 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 MAP3K21Q5TCX8 1036 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 DTHD1Q6ZMT9 781 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 KCNG4Q8TDN1 519 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 FERMT2Q96AC1 680 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 CHAMP1Q96JM3 812 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 SPATA32Q96LK8 384 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 ZHX1Q9UKY1 873 aaPredicted RBP13.92□□□□□ -0.18
LINC00339-204ENST00000434233 PCDHA12Q9UN75 941 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 Q9Y3F1 56 aa13.92□□□□□ -0.18
LINC00339-204ENST00000434233 SRPRBQ9Y5M8 271 aaKnown RBP13.92□□□□□ -0.18
LINC00339-204ENST00000434233 ARIH2O95376 493 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms