RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 NLRC4Q9NPP4 1024 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 SALL4Q9UJQ4 1053 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 TRAF5O00463 557 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 LCA5LO95447 670 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 SYF2O95926 243 aaKnown RBP13.08□□□□□ -0.32
CD44-209ENST00000433892 ACTN2P35609 894 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 MAGEA1P43355 309 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 MRPL12P52815 198 aaKnown RBP13.08□□□□□ -0.32
CD44-209ENST00000433892 MRPS25P82663 173 aaKnown RBP13.08□□□□□ -0.32
CD44-209ENST00000433892 KCNMA1Q12791 1236 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 CCNI2Q6ZMN8 369 aaPredicted RBP13.08□□□□□ -0.32
CD44-209ENST00000433892 CERS5Q8N5B7 392 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 FAM204AQ9H8W3 233 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 PSTPIP2Q9H939 334 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 USP40Q9NVE5 1235 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 PANK4Q9NVE7 773 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 HPCAL4Q9UM19 191 aa13.08□□□□□ -0.32
CD44-209ENST00000433892 E9PMD0 336 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 RAD21O60216 631 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 TOM1O60784 492 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 RNF40O75150 1001 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 SHMT1P34896 483 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 MATR3P43243 847 aaKnown RBP eCLIP13.07□□□□□ -0.32
CD44-209ENST00000433892 SCNN1DP51172 638 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 FKBP3Q00688 224 aaKnown RBP13.07□□□□□ -0.32
CD44-209ENST00000433892 CACNB1Q02641 598 aaPredicted RBP13.07□□□□□ -0.32
CD44-209ENST00000433892 EZH2Q15910 746 aaKnown RBP13.07□□□□□ -0.32
CD44-209ENST00000433892 CCDC40Q4G0X9 1142 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 ZCWPW2Q504Y3 356 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 FAM26FQ5R3K3 315 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 IQCEQ6IPM2 695 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 PPP1R18Q6NYC8 613 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 NFRKBQ6P4R8 1299 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 NELFCDQ8IXH7 590 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 GOLGA5Q8TBA6 731 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 HDAC7Q8WUI4 952 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 RIN2Q8WYP3 895 aaPredicted RBP13.07□□□□□ -0.32
CD44-209ENST00000433892 KANSL2Q9H9L4 492 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 SMARCAL1Q9NZC9 954 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 KIAA1024Q9UPX6 916 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 COL4A3BPQ9Y5P4 624 aa13.07□□□□□ -0.32
CD44-209ENST00000433892 NPHP3-ACAD11A0A0J9YXS1 232 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L15C9J2P7 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L13C9JLJ4 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L11C9JVI0 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L18D6R9N7 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L22D6RA61 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L17D6RBQ6 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L19D6RCP7 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L20D6RJB6 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 ZBTB5O15062 677 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 NCK2O43639 380 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 ADRA2BP18089 450 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 AARSP49588 968 aaKnown RBP eCLIP13.06□□□□□ -0.32
CD44-209ENST00000433892 RASSF7Q02833 373 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 RAD51AP2Q09MP3 1159 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L24Q0WX57 530 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 TDRD12Q587J7 1177 aaKnown RBP13.06□□□□□ -0.32
CD44-209ENST00000433892 PDXDC1Q6P996 788 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 USP17L6PQ6QN14 398 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 PROM2Q8N271 834 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 ALS2CR12Q96Q35 445 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 OSBPL9Q96SU4 736 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 CRACR2AQ9BSW2 395 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 SELENOOQ9BVL4 669 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 EHD2Q9NZN4 543 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 MYH10P35580 1976 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 LY75O60449 1722 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 HOXA10P31260 410 aaPredicted RBP13.06□□□□□ -0.32
CD44-209ENST00000433892 SLC1A4P43007 532 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 APBA1Q02410 837 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 ASTE1Q2TB18 679 aaPredicted RBP13.06□□□□□ -0.32
CD44-209ENST00000433892 HGSNATQ68CP4 663 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 SPATA4Q8NEY3 305 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 LRRC1Q9BTT6 524 aa13.06□□□□□ -0.32
CD44-209ENST00000433892 BMP2KQ9NSY1 1161 aaPredicted RBP13.06□□□□□ -0.32
CD44-209ENST00000433892 ZC3H4Q9UPT8 1303 aaKnown RBP13.06□□□□□ -0.32
CD44-209ENST00000433892 POTEB3A0JP26 581 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 POTECB2RU33 542 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 BUB1O43683 1085 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 DDR1Q08345 913 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 GPATCH4Q5T3I0 446 aaKnown RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 POTEBQ6S5H4 581 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 LEKR1Q6ZMV7 388 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 MTMR8Q96EF0 704 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 SWAP70Q9UH65 585 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 DMGDHQ9UI17 866 aaKnown RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 A0A0U1RQG5 324 aaPredicted RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 PPEF1O14829 653 aaPredicted RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 NOL4O94818 638 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 PLA2G4BP0C869 781 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 PRLRP16471 622 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 GGCXP38435 758 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 NAP1L1P55209 391 aaKnown RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 SLC7A5Q01650 507 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 SEPT2Q15019 361 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 DOK7Q18PE1 504 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 HERC4Q5GLZ8 1057 aaPredicted RBP13.05□□□□□ -0.32
CD44-209ENST00000433892 FAM83BQ5T0W9 1011 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 CCDC70Q6NSX1 233 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms