RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IRAK1P51617 712 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 ZBED6P86452 979 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 NNTQ13423 1086 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 C12orf60Q5U649 245 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 TMED8Q6PL24 325 aaPredicted RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 CREG2Q8IUH2 290 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 LARP4BQ92615 738 aaKnown RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 SPAG5Q96R06 1193 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 BRIP1Q9BX63 1249 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 C6orf50Q9HD87 102 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 MLXIPLQ9NP71 852 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 BSDC1Q9NW68 430 aaPredicted RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 TJP1Q07157 1748 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 SLIT2O94813 1529 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 SIPA1L3O60292 1781 aaPredicted RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 A0A087X0T9 212 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 HSF2BPO75031 334 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 FAM228BP0C875 321 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 VAV2P52735 878 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 GRB10Q13322 594 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 UBE4AQ14139 1066 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 VWA3BQ502W6 1294 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 TTMPQ5BVD1 217 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 CFAP58Q5T655 872 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 PIGOQ8TEQ8 1089 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 ZNF622Q969S3 477 aaKnown RBP eCLIP9.55□□□□□ -0.88
USP40-203ENST00000427112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.55□□□□□ -0.88
USP40-203ENST00000427112 FAM169AQ9Y6X4 670 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 FOXO6A8MYZ6 492 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 RSPH10B2B2RC85 870 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 E7EVH7 732 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 EBAG9O00559 213 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 BMP15O95972 392 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 RSPH10BP0C881 870 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 SLCO1A2P46721 670 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 PSMC6P62333 389 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 ACTN3Q08043 901 aaPredicted RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 IFT88Q13099 833 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 ARHGAP44Q17R89 818 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 KRT79Q5XKE5 535 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 CCDC51Q96ER9 411 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 SNX12Q9UMY4 172 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 ITGA4P13612 1032 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 CASP5P51878 434 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 KLHL30Q0D2K2 578 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 PARP10Q53GL7 1025 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 AADACL2Q6P093 401 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 TAX1BP1Q86VP1 789 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 ALS2CR12Q96Q35 445 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 DNAJC7Q99615 494 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 KCNQ5Q9NR82 932 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 PDS5AQ29RF7 1337 aaKnown RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 LRRN2O75325 713 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 GDF11O95390 407 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 PRR16Q569H4 304 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 GPBP1Q86WP2 473 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 CYP2W1Q8TAV3 490 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 BARHL2Q9NY43 387 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 ARPP21Q9UBL0 812 aaPredicted RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 PSMD14O00487 310 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 CALCAP01258 141 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 EEF1GP26641 437 aaKnown RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 CKAP4Q07065 602 aaKnown RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 CT47A1Q5JQC4 288 aaPredicted RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 MDM1Q8TC05 714 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 KAT2BQ92831 832 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 NGLY1Q96IV0 654 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 RNPC3Q96LT9 517 aaKnown RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 LBHD1Q9BQE6 289 aaPredicted RBP9.54□□□□□ -0.88
USP40-203ENST00000427112 BLOC1S4Q9NUP1 217 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 PANK4Q9NVE7 773 aa9.54□□□□□ -0.88
USP40-203ENST00000427112 TNS2Q63HR2 1409 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 ATP8B1O43520 1251 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 RHOBTB3O94955 611 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 SSTR3P32745 418 aaPredicted RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 RFC4P35249 363 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 FLT3P36888 993 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 HAUS3Q68CZ6 603 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 EP400NLQ6ZTU2 488 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 GIMAP7Q8NHV1 300 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 PNMA5Q96PV4 448 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 TLR10Q9BXR5 811 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 KBTBD4Q9NVX7 518 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP40-203ENST00000427112 BCL9O00512 1426 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 IVLP07476 585 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 CASP4P49662 377 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 FAM83BQ5T0W9 1011 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 ZNF746Q6NUN9 644 aaPredicted RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 CCDC84Q86UT8 332 aaPredicted RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 CCDC25Q86WR0 208 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 THOC1Q96FV9 657 aaKnown RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 AMACRQ9UHK6 382 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 SHTN1A0MZ66 631 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 LRRC10BA6NIK2 292 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 DCDC2CA8MYV0 355 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 ADAM9Q13443 819 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 TPTE2Q6XPS3 522 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 FBXO33Q7Z6M2 555 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms