RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 TXNP10599 105 aaKnown RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 CCL5P13501 91 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 AKR1A1P14550 325 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 GCFC2P16383 781 aaKnown RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 SMPD1P17405 629 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 TRAPPC10P48553 1259 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 TOB1P50616 345 aaPredicted RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 MTMR1Q13613 665 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 NBR1Q14596 966 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 TTC38Q5R3I4 469 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 GJC2Q5T442 439 aaPredicted RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 ANO1Q5XXA6 986 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 NLRX1Q86UT6 975 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 PLA2G4DQ86XP0 818 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 COPS5Q92905 334 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 IPO9Q96P70 1041 aaKnown RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 KCNH7Q9NS40 1196 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 FAM184BQ9ULE4 1060 aa13.75□□□□□ -0.21
LINC00539-202ENST00000423575 NOL7Q9UMY1 257 aaKnown RBP13.75□□□□□ -0.21
LINC00539-202ENST00000423575 CCNT1O60563 726 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 F13A1P00488 732 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 PDIA4P13667 645 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 UBA1P22314 1058 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 SETQ01105 290 aaPredicted RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 SP2Q02086 613 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 TNFAIP2Q03169 654 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 TTLL4Q14679 1199 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 LY6KQ17RY6 165 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 Q4G0T1 1027 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 DUSP28Q4G0W2 176 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 MYSM1Q5VVJ2 828 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 IQSEC1Q6DN90 963 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 PPP4R3AQ6IN85 833 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 FAM173BQ6P4H8 233 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 CDHR1Q96JP9 859 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 UIMC1Q96RL1 719 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 NAP1L4Q99733 375 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 AGO4Q9HCK5 861 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 PAK6Q9NQU5 681 aaPredicted RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 PKD2L1Q9P0L9 805 aa13.74□□□□□ -0.21
LINC00539-202ENST00000423575 DDX20Q9UHI6 824 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 DDX25Q9UHL0 483 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 DDX41Q9UJV9 622 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 GNEQ9Y223 722 aaKnown RBP13.74□□□□□ -0.21
LINC00539-202ENST00000423575 POTEFA5A3E0 1075 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 SORBS3O60504 671 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 ATP9AO75110 1047 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 KCNA2P16389 499 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 ITGB3BPQ13352 177 aaPredicted RBP13.73□□□□□ -0.21
LINC00539-202ENST00000423575 RILPL1Q5EBL4 403 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 LHX8Q68G74 356 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 KCNV1Q6PIU1 500 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 POTEDQ86YR6 584 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 ETNPPLQ8TBG4 499 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 RNF208Q9H0X6 261 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 ZSCAN16Q9H4T2 348 aaPredicted RBP13.73□□□□□ -0.21
LINC00539-202ENST00000423575 BCAS3Q9H6U6 928 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 PCDHB6Q9Y5E3 794 aa13.73□□□□□ -0.21
LINC00539-202ENST00000423575 MSH4O15457 936 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 MAFGO15525 162 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 NEMFO60524 1076 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 DUSP11O75319 330 aaKnown RBP13.72□□□□□ -0.21
LINC00539-202ENST00000423575 GGPS1O95749 300 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 TGFB3P10600 412 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 RARBP10826 455 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 MCM7P33993 719 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 ARHGAP1Q07960 439 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 ZNF174Q15697 407 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 TLK2Q86UE8 772 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 GJA10Q969M2 543 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 DEFB118Q96PH6 123 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 SENP7Q9BQF6 1050 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 ZNF577Q9BSK1 485 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 TMEM60Q9H2L4 133 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 KCNMB3Q9NPA1 279 aa13.72□□□□□ -0.21
LINC00539-202ENST00000423575 SYNRGQ9UMZ2 1314 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 BRCA2P51587 3418 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 IPO5O00410 1097 aaKnown RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 NKRFO15226 690 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 MSCO60682 206 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 FARP2O94887 1054 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 GH1P01241 217 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 IRX5P78411 483 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 ORC2Q13416 577 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 CELF3Q5SZQ8 465 aaKnown RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 HAS1Q92839 578 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 SLC5A5Q92911 643 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 FTOQ9C0B1 505 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 UPF3AQ9H1J1 476 aaKnown RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 XPNPEP3Q9NQH7 507 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.71□□□□□ -0.21
LINC00539-202ENST00000423575 TELO2Q9Y4R8 837 aa13.71□□□□□ -0.21
LINC00539-202ENST00000423575 NFASCO94856 1347 aa13.7□□□□□ -0.22
LINC00539-202ENST00000423575 MYADML2A6NDP7 307 aa13.7□□□□□ -0.22
LINC00539-202ENST00000423575 CTAGE5O15320 804 aa13.7□□□□□ -0.22
LINC00539-202ENST00000423575 DHX15O43143 795 aaKnown RBP13.7□□□□□ -0.22
LINC00539-202ENST00000423575 DYNC1LI2O43237 492 aaPredicted RBP13.7□□□□□ -0.22
LINC00539-202ENST00000423575 ADAMTS4O75173 837 aa13.7□□□□□ -0.22
LINC00539-202ENST00000423575 PGK1P00558 417 aa13.7□□□□□ -0.22
LINC00539-202ENST00000423575 GJB1P08034 283 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms