RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 TRAPPC10P48553 1259 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 SETQ01105 290 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-202ENST00000422991 MTMR1Q13613 665 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 MTFR1Q15390 333 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 PPP4R3AQ6IN85 833 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 CCDC62Q6P9F0 684 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 NAP1L4Q99733 375 aaKnown RBP19.31■□□□□ 0.68
COL7A1-202ENST00000422991 TMEM106CQ9BVX2 250 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.31■□□□□ 0.68
COL7A1-202ENST00000422991 FAM184BQ9ULE4 1060 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 NOL7Q9UMY1 257 aaKnown RBP19.31■□□□□ 0.68
COL7A1-202ENST00000422991 MRVI1Q9Y6F6 885 aa19.31■□□□□ 0.68
COL7A1-202ENST00000422991 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-202ENST00000422991 CNGA1P29973 690 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 TOB1P50616 345 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-202ENST00000422991 TTLL4Q14679 1199 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 Q4G0T1 1027 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 PRR16Q569H4 304 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 IQSEC1Q6DN90 963 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 KCNV1Q6PIU1 500 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 PLA2G4DQ86XP0 818 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 CDHR1Q96JP9 859 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 PAK6Q9NQU5 681 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-202ENST00000422991 KCNH7Q9NS40 1196 aa19.3■□□□□ 0.68
COL7A1-202ENST00000422991 POTEFA5A3E0 1075 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 MAFGO15525 162 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 SLC37A4O43826 429 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 CCNT1O60563 726 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 BRD1O95696 1058 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 TXNP10599 105 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 TGFB3P10600 412 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 SMPD1P17405 629 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 TNFAIP2Q03169 654 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 DUSP28Q4G0W2 176 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 TTC38Q5R3I4 469 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 TMEM63BQ5T3F8 832 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 MYSM1Q5VVJ2 828 aa19.29■□□□□ 0.68
COL7A1-202ENST00000422991 LENG1Q96BZ8 264 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 IPO9Q96P70 1041 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 ZSCAN16Q9H4T2 348 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 DDX20Q9UHI6 824 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 DDX25Q9UHL0 483 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 DDX41Q9UJV9 622 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 KIAA0100Q14667 2235 aaKnown RBP19.29■□□□□ 0.68
COL7A1-202ENST00000422991 F13A1P00488 732 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 MYCP01106 439 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 ARP10275 920 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 KCNA2P16389 499 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 ATP2B1P20020 1258 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 UBA1P22314 1058 aaKnown RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 SP2Q02086 613 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 LY6KQ17RY6 165 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 RILPL1Q5EBL4 403 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 GJC2Q5T442 439 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 FOXD4L5Q5VV16 416 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 FOXD4L4Q8WXT5 416 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 AGO4Q9HCK5 861 aaKnown RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 GNEQ9Y223 722 aaKnown RBP19.28■□□□□ 0.68
COL7A1-202ENST00000422991 ZDHHC9Q9Y397 364 aa19.28■□□□□ 0.68
COL7A1-202ENST00000422991 NKRFO15226 690 aaKnown RBP eCLIP19.27■□□□□ 0.68
COL7A1-202ENST00000422991 MSCO60682 206 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 PTGS1P23219 599 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 ORC2Q13416 577 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-202ENST00000422991 NBR1Q14596 966 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 ETNPPLQ8TBG4 499 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 SENP7Q9BQF6 1050 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 RNF208Q9H0X6 261 aa19.27■□□□□ 0.68
COL7A1-202ENST00000422991 MSH4O15457 936 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 ATP9AO75110 1047 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 DUSP11O75319 330 aaKnown RBP19.26■□□□□ 0.67
COL7A1-202ENST00000422991 RARBP10826 455 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 MCM7P33993 719 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 ARHGAP1Q07960 439 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 ITGB3BPQ13352 177 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-202ENST00000422991 ANO1Q5XXA6 986 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 LHX8Q68G74 356 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 POTEDQ86YR6 584 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 COPS5Q92905 334 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 KCNMB3Q9NPA1 279 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 PKD2L1Q9P0L9 805 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 PCDHB6Q9Y5E3 794 aa19.26■□□□□ 0.67
COL7A1-202ENST00000422991 SYNRGQ9UMZ2 1314 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 IPO5O00410 1097 aaKnown RBP19.25■□□□□ 0.67
COL7A1-202ENST00000422991 NEMFO60524 1076 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 GGPS1O95749 300 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 GH1P01241 217 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 NEDD9Q14511 834 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 ZNF174Q15697 407 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 FAM173BQ6P4H8 233 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 TLK2Q86UE8 772 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 SLC5A5Q92911 643 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 EMID1Q96A84 441 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-202ENST00000422991 ZNF577Q9BSK1 485 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 UPF3AQ9H1J1 476 aaKnown RBP19.25■□□□□ 0.67
COL7A1-202ENST00000422991 CIZ1Q9ULV3 898 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-202ENST00000422991 Q9Y3F1 56 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 MKI67P46013 3256 aaKnown RBP19.25■□□□□ 0.67
COL7A1-202ENST00000422991 NFASCO94856 1347 aa19.25■□□□□ 0.67
COL7A1-202ENST00000422991 TBX3O15119 743 aa19.24■□□□□ 0.67
COL7A1-202ENST00000422991 EN2P19622 333 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms