RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CCDC40Q4G0X9 1142 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 TMED8Q6PL24 325 aaPredicted RBP23.43■■□□□ 1.34
USP48-205ENST00000421625 TMBIM4Q9HC24 238 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 KLC4Q9NSK0 619 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 LRRC41Q15345 812 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 C6orf89Q6UWU4 347 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 CYFIP2Q96F07 1278 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 LAMB1P07942 1786 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 GOLGA8HP0CJ92 632 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 HSPA9P38646 679 aaKnown RBP23.42■■□□□ 1.34
USP48-205ENST00000421625 NAB2Q15742 525 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 MEI1Q5TIA1 1274 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 MARCH10Q8NA82 808 aaPredicted RBP23.42■■□□□ 1.34
USP48-205ENST00000421625 FAM84BQ96KN1 310 aaPredicted RBP23.42■■□□□ 1.34
USP48-205ENST00000421625 PACSIN1Q9BY11 444 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 A1CFQ9NQ94 594 aaKnown RBP23.42■■□□□ 1.34
USP48-205ENST00000421625 BLOC1S4Q9NUP1 217 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 USP17L3A6NCW0 530 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 USP17L4A6NCW7 530 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 CAVIN4Q5BKX8 364 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 SV2BQ7L1I2 683 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 USP17L1Q7RTZ2 530 aa23.42■■□□□ 1.34
USP48-205ENST00000421625 PROCA1Q8NCQ7 364 aaPredicted RBP23.42■■□□□ 1.34
USP48-205ENST00000421625 GRID2IPA4D2P6 1211 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 RASSF9O75901 435 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 SMTNP53814 917 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 ERVK-9P63128 1117 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 GRB10Q13322 594 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 HLTFQ14527 1009 aaKnown RBP eCLIP23.41■■□□□ 1.343e-6■■□□□ 13.4
USP48-205ENST00000421625 ENOX2Q16206 610 aaKnown RBP23.41■■□□□ 1.34
USP48-205ENST00000421625 SPRED3Q2MJR0 410 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 SLC9C1Q4G0N8 1177 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 DYNLL2Q96FJ2 89 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 SLC40A1Q9NP59 571 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 MCM9Q9NXL9 1143 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 ARPP21Q9UBL0 812 aaPredicted RBP23.41■■□□□ 1.34
USP48-205ENST00000421625 UBAP1LF5GYI3 381 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 TOM1O60784 492 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 NOL4O94818 638 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 CLSTN1O94985 981 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 NTSR2O95665 410 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 KLRK1P26718 216 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 CALML4Q96GE6 196 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 PHLPP1O60346 1717 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 HSD17B3P37058 310 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 ARID5AQ03989 594 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 SFMBT2Q5VUG0 894 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 GALNT17Q6IS24 598 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 UNC13DQ70J99 1090 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 USP38Q8NB14 1042 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 C1orf131Q8NDD1 294 aaKnown RBP23.41■■□□□ 1.34
USP48-205ENST00000421625 TBC1D5Q92609 795 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 ATP8A2Q9NTI2 1148 aa23.41■■□□□ 1.34
USP48-205ENST00000421625 CHUKO15111 745 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 CCDC172P0C7W6 258 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 TAF1P21675 1872 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 ECHS1P30084 290 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 TXKP42681 527 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 UAP1Q16222 522 aaPredicted RBP23.4■■□□□ 1.34
USP48-205ENST00000421625 PPP4R3AQ6IN85 833 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 DDX42Q86XP3 938 aaKnown RBP eCLIP23.4■■□□□ 1.34
USP48-205ENST00000421625 GUF1Q8N442 669 aaKnown RBP23.4■■□□□ 1.34
USP48-205ENST00000421625 TAF1DQ9H5J8 278 aaPredicted RBP23.4■■□□□ 1.34
USP48-205ENST00000421625 NIP7Q9Y221 180 aaKnown RBP eCLIP23.4■■□□□ 1.34
USP48-205ENST00000421625 ABCB11O95342 1321 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 KIAA1551Q9HCM1 1747 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 BACH1O14867 736 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 SERPING1P05155 500 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 PRDX5P30044 214 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 NONOQ15233 471 aaKnown RBP eCLIP23.4■■□□□ 1.343e-6■■■■□ 21.1
USP48-205ENST00000421625 FAM83BQ5T0W9 1011 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 DGKHQ86XP1 1220 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 C8orf37Q96NL8 207 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 PLCB1Q9NQ66 1216 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 PCDHGC5Q9Y5F6 944 aa23.4■■□□□ 1.34
USP48-205ENST00000421625 GOLGA6L10A6NI86 522 aa23.39■■□□□ 1.34
USP48-205ENST00000421625 MYBP10242 640 aa23.39■■□□□ 1.34
USP48-205ENST00000421625 NAPAP54920 295 aa23.39■■□□□ 1.34
USP48-205ENST00000421625 POLR2FP61218 127 aaKnown RBP23.39■■□□□ 1.34
USP48-205ENST00000421625 QPCTQ16769 361 aa23.39■■□□□ 1.34
USP48-205ENST00000421625 PNMA5Q96PV4 448 aa23.39■■□□□ 1.34
USP48-205ENST00000421625 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.39■■□□□ 1.34
USP48-205ENST00000421625 A0A087X0T9 212 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 KCNQ2O43526 872 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 FGFR1OPO95684 399 aaKnown RBP23.39■■□□□ 1.33
USP48-205ENST00000421625 FAM228BP0C875 321 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 TMOD1P28289 359 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 UBE4AQ14139 1066 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 SBK1Q52WX2 424 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 C3orf67Q6ZVT6 689 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 LSM14BQ9BX40 385 aaKnown RBP23.39■■□□□ 1.33
USP48-205ENST00000421625 KANSL2Q9H9L4 492 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 CEP72Q9P209 647 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 DDX20Q9UHI6 824 aaKnown RBP23.39■■□□□ 1.33
USP48-205ENST00000421625 JAG2Q9Y219 1238 aa23.39■■□□□ 1.33
USP48-205ENST00000421625 H0YGN5 161 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 GCOM1H8Y6P7 765 aaPredicted RBP23.38■■□□□ 1.33
USP48-205ENST00000421625 MYZAPP0CAP1 466 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 IBSPP21815 317 aaPredicted RBP23.38■■□□□ 1.33
USP48-205ENST00000421625 TNNC1P63316 161 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms