RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ITSN2Q9NZM3 1697 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 FANCAO15360 1455 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 KLHL33A6NCF5 533 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 ARNTLO00327 626 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 TCERG1O14776 1098 aaKnown RBP6.15□□□□□ -1.43
VPS13A-207ENST00000419472 PQBP1O60828 265 aaKnown RBP6.15□□□□□ -1.43
VPS13A-207ENST00000419472 MAPK9P45984 424 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 GPR3P46089 330 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 AFF1P51825 1210 aaKnown RBP6.15□□□□□ -1.43
VPS13A-207ENST00000419472 PRAMEF13Q5VWM6 474 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 C7orf61Q8IZ16 206 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 SLC2A13Q96QE2 648 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 PHF20Q9BVI0 1012 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 RNF38Q9H0F5 515 aa6.15□□□□□ -1.43
VPS13A-207ENST00000419472 FAM177BA6PVY3 158 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 AQP7O14520 342 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 NLRP12P59046 1061 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 C19orf57Q0VDD7 668 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 KRT72Q14CN4 511 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 GRAMD1CQ8IYS0 662 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CCDC89Q8N998 374 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 KREMEN2Q8NCW0 462 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 DIS3LQ8TF46 1054 aaKnown RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CCT6BQ92526 530 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 JADE3Q92613 823 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 ZFP42Q96MM3 310 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 ZDHHC15Q96MV8 337 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 BHMT2Q9H2M3 363 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CABP5Q9NP86 173 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 GPRC5CQ9NQ84 441 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 B4GALT6Q9UBX8 382 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 EVLQ9UI08 416 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 TMEFF2Q9UIK5 374 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 MINPP1Q9UNW1 487 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 REREQ9P2R6 1566 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 DENND4BO75064 1496 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 COL17A1Q9UMD9 1497 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 FGFR3P22607 806 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 PDCD1Q15116 288 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 NBPF12Q5TAG4 269 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 TRIM67Q6ZTA4 783 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 FAM43AQ8N2R8 423 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CISD2Q8N5K1 135 aaKnown RBP6.14□□□□□ -1.43
VPS13A-207ENST00000419472 CHST14Q8NCH0 376 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 OXSMQ9NWU1 459 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 SERPINB13Q9UIV8 391 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 AKNAQ7Z591 1439 aa6.14□□□□□ -1.43
VPS13A-207ENST00000419472 ARVCFO00192 962 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SNX2O60749 519 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 OFD1O75665 1012 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 ITGA4P13612 1032 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 IL6STP40189 918 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 MECP2P51608 486 aaKnown RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SESN3P58005 492 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SCRN1Q12765 414 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 KIAA0753Q2KHM9 967 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 ANKRD39Q53RE8 183 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 NOL9Q5SY16 702 aaKnown RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 LILRA6Q6PI73 481 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 FIBCD1Q8N539 461 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 NUDT8Q8WV74 236 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 GTPBP3Q969Y2 492 aaKnown RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 TRMT13Q9NUP7 481 aaKnown RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 RTEL1Q9NZ71 1219 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 GPR52Q9Y2T5 361 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SLC4A7Q9Y6M7 1214 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 KDM5CP41229 1560 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 CDC42BPAQ5VT25 1732 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 CDC42BPBQ9Y5S2 1711 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 LRRC10BA6NIK2 292 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 GPR25O00155 361 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 RXRBP28702 533 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 HOXC12P31275 282 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 ICE2Q659A1 982 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SLC6A19Q695T7 634 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 PSAPL1Q6NUJ1 521 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 TRIM46Q7Z4K8 759 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 MYLK4Q86YV6 388 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 PCDH19Q8TAB3 1148 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 CYB5D2Q8WUJ1 264 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 KLHDC7BQ96G42 594 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 MCMBPQ9BTE3 642 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SOX17Q9H6I2 414 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 CCM2LQ9NUG4 571 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-207ENST00000419472 RRN3Q9NYV6 651 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 PLEKHH2Q8IVE3 1493 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 SRCAPQ6ZRS2 3230 aa6.13□□□□□ -1.43
VPS13A-207ENST00000419472 DLL1O00548 723 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 LCP1P13796 627 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 CASP2P42575 452 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 SLBPQ14493 270 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 OTOP3Q7RTS5 596 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 HID1Q8IV36 788 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PPP1R13LQ8WUF5 828 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 DCAF4Q8WV16 495 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 CLIC5Q9NZA1 410 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PPP1R9AQ9ULJ8 1098 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 POGZQ7Z3K3 1410 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms