RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 GTF2IRD1Q9UHL9 959 aa29.23■■■□□ 2.27
VEGFA-208ENST00000417285 SLC12A7Q9Y666 1083 aa29.23■■■□□ 2.27
VEGFA-208ENST00000417285 UNC80Q8N2C7 3258 aa29.23■■■□□ 2.27
VEGFA-208ENST00000417285 KIAA1217Q5T5P2 1943 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 PIK3CDO00329 1044 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 CDC45O75419 566 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 PARNO95453 639 aaKnown RBP29.22■■■□□ 2.27
VEGFA-208ENST00000417285 SP2Q02086 613 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 MFSD10Q14728 455 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 XRRA1Q6P2D8 792 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 FTOQ9C0B1 505 aaKnown RBP eCLIP29.22■■■□□ 2.275e-19■□□□□ 10.1
VEGFA-208ENST00000417285 HDAC6Q9UBN7 1215 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 PCDHA11Q9Y5I1 949 aa29.22■■■□□ 2.27
VEGFA-208ENST00000417285 HAS3O00219 553 aa29.21■■■□□ 2.27
VEGFA-208ENST00000417285 ATP2A2P16615 1042 aaKnown RBP29.21■■■□□ 2.27
VEGFA-208ENST00000417285 KIAA0753Q2KHM9 967 aa29.21■■■□□ 2.27
VEGFA-208ENST00000417285 SMARCC2Q8TAQ2 1214 aa29.21■■■□□ 2.27
VEGFA-208ENST00000417285 GAS2L1Q99501 681 aaPredicted RBP29.21■■■□□ 2.27
VEGFA-208ENST00000417285 ALG1Q9BT22 464 aa29.21■■■□□ 2.27
VEGFA-208ENST00000417285 FRMPD4Q14CM0 1322 aa29.2■■■□□ 2.27
VEGFA-208ENST00000417285 UBA1P22314 1058 aaKnown RBP29.2■■■□□ 2.26
VEGFA-208ENST00000417285 ICAM3P32942 547 aa29.2■■■□□ 2.26
VEGFA-208ENST00000417285 HSDL1Q3SXM5 330 aa29.2■■■□□ 2.26
VEGFA-208ENST00000417285 SRBD1Q8N5C6 995 aaKnown RBP29.2■■■□□ 2.26
VEGFA-208ENST00000417285 FANCBQ8NB91 859 aa29.2■■■□□ 2.26
VEGFA-208ENST00000417285 PHOSPHO2Q8TCD6 241 aa29.2■■■□□ 2.26
VEGFA-208ENST00000417285 INPP4AQ96PE3 977 aaPredicted RBP29.2■■■□□ 2.26
VEGFA-208ENST00000417285 SELPP16109 830 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 MRPS9P82933 396 aaKnown RBP29.19■■■□□ 2.26
VEGFA-208ENST00000417285 RBL2Q08999 1139 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 NEDD9Q14511 834 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 SYNE3Q6ZMZ3 975 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 SGMS1Q86VZ5 419 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 CTAGE1Q96RT6 745 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 NKX2-4Q9H2Z4 354 aa29.19■■■□□ 2.26
VEGFA-208ENST00000417285 SPATA31C2B4DYI2 1134 aa29.18■■■□□ 2.26
VEGFA-208ENST00000417285 ZNF286BP0CG31 522 aa29.18■■■□□ 2.26
VEGFA-208ENST00000417285 PTK7Q13308 1070 aa29.18■■■□□ 2.26
VEGFA-208ENST00000417285 PSTPIP2Q9H939 334 aa29.18■■■□□ 2.26
VEGFA-208ENST00000417285 YBX2Q9Y2T7 364 aaKnown RBP29.18■■■□□ 2.26
VEGFA-208ENST00000417285 PRUNE2Q8WUY3 3088 aa29.18■■■□□ 2.26
VEGFA-208ENST00000417285 MEIS2O14770 477 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 BAIAP3O94812 1187 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 PLEKHA8P1O95397 391 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 PCNX4Q63HM2 1172 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 USP17L6PQ6QN14 398 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 ZFP91Q96JP5 570 aaPredicted RBP29.17■■■□□ 2.26
VEGFA-208ENST00000417285 NEK1Q96PY6 1258 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 SLC9A7Q96T83 725 aa29.17■■■□□ 2.26
VEGFA-208ENST00000417285 CDH23Q9H251 3354 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 FIBPO43427 364 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 RABGGTBP53611 331 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 TSGA10IPQ3SY00 556 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 GPKOWQ92917 476 aaPredicted RBP eCLIP29.16■■■□□ 2.269e-7■□□□□ 11
VEGFA-208ENST00000417285 C16orf70Q9BSU1 422 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 USP26Q9BXU7 913 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 PRDM12Q9H4Q4 367 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 RTEL1Q9NZ71 1219 aa29.16■■■□□ 2.26
VEGFA-208ENST00000417285 NOP56O00567 594 aaKnown RBP29.15■■■□□ 2.26
VEGFA-208ENST00000417285 SORBS3O60504 671 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 COL9A3Q14050 684 aaPredicted RBP29.15■■■□□ 2.26
VEGFA-208ENST00000417285 METTL7BQ6UX53 244 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 LRRC8DQ7L1W4 858 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 DHX38Q92620 1227 aaKnown RBP29.15■■■□□ 2.26
VEGFA-208ENST00000417285 SENP7Q9BQF6 1050 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 LRRC2Q9BYS8 371 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 EYSQ5T1H1 3165 aa29.15■■■□□ 2.26
VEGFA-208ENST00000417285 H3BRB1 525 aa29.14■■■□□ 2.26
VEGFA-208ENST00000417285 CKBP12277 381 aa29.14■■■□□ 2.26
VEGFA-208ENST00000417285 RXRAP19793 462 aa29.14■■■□□ 2.26
VEGFA-208ENST00000417285 TMTC3Q6ZXV5 915 aa29.14■■■□□ 2.26
VEGFA-208ENST00000417285 DHX32Q7L7V1 743 aaKnown RBP29.14■■■□□ 2.26
VEGFA-208ENST00000417285 NLRX1Q86UT6 975 aa29.14■■■□□ 2.26
VEGFA-208ENST00000417285 CMTR1Q8N1G2 835 aaKnown RBP29.14■■■□□ 2.26
VEGFA-208ENST00000417285 GIMAP8Q8ND71 665 aaPredicted RBP29.14■■■□□ 2.26
VEGFA-208ENST00000417285 TUT1Q9H6E5 874 aaKnown RBP29.14■■■□□ 2.26
VEGFA-208ENST00000417285 KIF28PB7ZC32 967 aa29.13■■■□□ 2.25
VEGFA-208ENST00000417285 NEFLP07196 543 aa29.13■■■□□ 2.25
VEGFA-208ENST00000417285 EXOSC10Q01780 885 aaKnown RBP29.13■■■□□ 2.25
VEGFA-208ENST00000417285 KRT32Q14532 448 aa29.13■■■□□ 2.25
VEGFA-208ENST00000417285 PPP2R2DQ66LE6 453 aa29.13■■■□□ 2.25
VEGFA-208ENST00000417285 MYO9BQ13459 2157 aa29.12■■■□□ 2.25
VEGFA-208ENST00000417285 CYFIP1Q7L576 1253 aa29.12■■■□□ 2.25
VEGFA-208ENST00000417285 TEX2Q8IWB9 1127 aa29.12■■■□□ 2.25
VEGFA-208ENST00000417285 CCDC82Q8N4S0 544 aa29.12■■■□□ 2.25
VEGFA-208ENST00000417285 CDHR1Q96JP9 859 aa29.12■■■□□ 2.25
VEGFA-208ENST00000417285 RBM28Q9NW13 759 aaKnown RBP29.12■■■□□ 2.25
VEGFA-208ENST00000417285 CHD7Q9P2D1 2997 aa29.11■■■□□ 2.25
VEGFA-208ENST00000417285 CXCL10P02778 98 aa29.11■■■□□ 2.25
VEGFA-208ENST00000417285 KCNJ6P48051 423 aa29.11■■■□□ 2.25
VEGFA-208ENST00000417285 GPNMBQ14956 572 aa29.11■■■□□ 2.25
VEGFA-208ENST00000417285 BCAS3Q9H6U6 928 aa29.11■■■□□ 2.25
VEGFA-208ENST00000417285 C17orf102A2RUQ5 167 aa29.1■■■□□ 2.25
VEGFA-208ENST00000417285 LGALS2P05162 132 aa29.1■■■□□ 2.25
VEGFA-208ENST00000417285 HMGB1P09429 215 aaKnown RBP29.1■■■□□ 2.25
VEGFA-208ENST00000417285 MYOGP15173 224 aa29.1■■■□□ 2.25
VEGFA-208ENST00000417285 SEMA3FQ13275 785 aa29.1■■■□□ 2.25
VEGFA-208ENST00000417285 TRIM71Q2Q1W2 868 aaKnown RBP29.1■■■□□ 2.25
VEGFA-208ENST00000417285 CNKSR3Q6P9H4 555 aa29.1■■■□□ 2.25
VEGFA-208ENST00000417285 SERINC5Q86VE9 423 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms