RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ARHGAP24Q8N264 748 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 CRACR2BQ8N4Y2 399 aaPredicted RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 AGAP11Q8TF27 550 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 PPP1R9AQ9ULJ8 1098 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 TNKSO95271 1327 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 ATP7BP35670 1465 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 IQGAP3Q86VI3 1631 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 C21orf2O43822 256 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 NQO1P15559 274 aaKnown RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 TNFAIP3P21580 790 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 CTNNA2P26232 953 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 PLCB3Q01970 1234 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 HERC4Q5GLZ8 1057 aaPredicted RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 UBL4BQ8N7F7 174 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 FGFR1OP2Q9NVK5 253 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 RNF17Q9BXT8 1623 aaKnown RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 A0A1W2PQC6 194 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF233A6NK53 670 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 PPP1R3GB7ZBB8 358 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 DR1Q01658 176 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 MAN2A1Q16706 1144 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 RFX8Q6ZV50 586 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 TRMT1LQ7Z2T5 733 aaKnown RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 TBC1D10CQ8IV04 446 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 DTX3LQ8TDB6 740 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 NLRP3Q96P20 1036 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 PARP2Q9UGN5 583 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 FAF1Q9UNN5 650 aaPredicted RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 LGR5O75473 907 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 UBOX5O94941 541 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 MRPL12P52815 198 aaKnown RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 IL9RQ01113 521 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 STAG2Q8N3U4 1231 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 CEP70Q8NHQ1 597 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF496Q96IT1 587 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 PBKQ96KB5 322 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 GOLPH3Q9H4A6 298 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 ASXL2Q76L83 1435 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 CEP152O94986 1710 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 IGKV5-2P06315 115 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 PDE6AP16499 860 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 KCTD19Q17RG1 926 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 DNAJC9Q8WXX5 260 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 RUBCNQ92622 972 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 GPKOWQ92917 476 aaPredicted RBP eCLIP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 HAUS1Q96CS2 278 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 SH3GL2Q99962 352 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TMBIM4Q9HC24 238 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TCEAL9Q9UHQ7 104 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 HPS5Q9UPZ3 1129 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 USP15Q9Y4E8 981 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 MYO5CQ9NQX4 1742 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 ARHGAP42A6NI28 874 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TROVE2P10155 538 aaKnown RBP eCLIP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 LONP1P36776 959 aaKnown RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 AMPD2Q01433 879 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 DPYDQ12882 1025 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 CDC37Q16543 378 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 GSDMBQ8TAX9 411 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 KDM4CQ9H3R0 1056 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 SENP2Q9HC62 589 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF711Q9Y462 761 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TTI1O43156 1089 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 GNAT2P19087 354 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 KCNA3P22001 575 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 PMS2P54278 862 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 BYSLQ13895 437 aaKnown RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TEX9Q8N6V9 391 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 LRRC37BQ96QE4 947 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-201ENST00000399429 CROCC2H7BZ55 1655 aa10.13□□□□□ -0.79
COL28A1-201ENST00000399429 CDC42BPAQ5VT25 1732 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 MAGEB6P1A0A0J9YX57 407 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CETN1Q12798 172 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ANKRD20A2Q5SQ80 823 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ANKRD20A1Q5TYW2 823 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ARHGEF18Q6ZSZ5 1173 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ARHGAP22Q7Z5H3 698 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 DBR1Q9UK59 544 aaKnown RBP10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CRB1P82279 1406 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 DNM1LO00429 736 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 PSMC4P43686 418 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 TNNI2P48788 182 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 SH3BGRP55822 239 aaPredicted RBP10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CCDC152Q4G0S7 254 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 LRIG3Q6UXM1 1119 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CREG2Q8IUH2 290 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 C3orf20Q8ND61 904 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CAVIN3Q969G5 261 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CENPKQ9BS16 269 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 HSD3B7Q9H2F3 369 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 RGL1Q9NZL6 768 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 SLC4A7Q9Y6M7 1214 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 WDR91A4D1P6 747 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 POC1B-GALNT4F8VUJ3 575 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CCDC188H7C350 402 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ATP2A1O14983 1001 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 SERPING1P05155 500 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 EPB41P11171 864 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms