RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 GUCY1A2P33402 732 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 TOB1P50616 345 aaPredicted RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 SEMA3FQ13275 785 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 IFIT1BQ5T764 474 aaKnown RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 NBPF12Q5TAG4 269 aaPredicted RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 MICALCLQ6ZW33 695 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 IQCA1Q86XH1 822 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 ZNF654Q8IZM8 581 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 CCDC82Q8N4S0 544 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 NUP133Q8WUM0 1156 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 LIMA1Q9UHB6 759 aaKnown RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 GGA2Q9UJY4 613 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 SAMM50Q9Y512 469 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 ENC1O14682 589 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 ZMYND10O75800 440 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 CD44P16070 742 aaKnown RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 RDXP35241 583 aaKnown RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 SMTNP53814 917 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 GRIN1Q05586 938 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 PLCB4Q15147 1175 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 EMC10Q5UCC4 262 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 FKBP1CQ5VVH2 108 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 ALS2CLQ60I27 953 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 TATDN1Q6P1N9 297 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 FAM83AQ86UY5 434 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 SIAH1Q8IUQ4 282 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 TRIM22Q8IYM9 498 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 GRAMD1CQ8IYS0 662 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 EHBP1Q8NDI1 1231 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 NEDD1Q8NHV4 660 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 SLC12A7Q9Y666 1083 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 BAZ2BQ9UIF8 2168 aaKnown RBP12.33□□□□□ -0.43
CUX1-204ENST00000393824 GLTPD2A6NH11 291 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 KIF3CO14782 793 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 KRT9P35527 623 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 ITIH3Q06033 890 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 IQCEQ6IPM2 695 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 SH3RF1Q7Z6J0 888 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 DIS3L2Q8IYB7 885 aaKnown RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 GSDMAQ96QA5 445 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 TMEM47Q9BQJ4 181 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 CPVLQ9H3G5 476 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 MYH8P13535 1937 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 IGKV6D-41A0A0C4DH26 115 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 ANO9A1A5B4 782 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 PPP1R3GB7ZBB8 358 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 MPHOSPH10O00566 681 aaKnown RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 SRGAP2O75044 1071 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 RASSF9O75901 435 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 BMP15O95972 392 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 SLC35G1Q2M3R5 365 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 CCDC70Q6NSX1 233 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 GSPT2Q8IYD1 628 aaKnown RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 LRRC47Q8N1G4 583 aaKnown RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 TMTC2Q8N394 836 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 MMGT1Q8N4V1 131 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 JAKMIP2Q96AA8 810 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 NUP88Q99567 741 aaPredicted RBP12.33□□□□□ -0.44
CUX1-204ENST00000393824 CHP1Q99653 195 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 SLC26A6Q9BXS9 759 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 KLC4Q9NSK0 619 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 TRIM10Q9UDY6 481 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 TAOK2Q9UL54 1235 aa12.33□□□□□ -0.44
CUX1-204ENST00000393824 POLR2AP24928 1970 aaKnown RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 hCG_1642624A0A1W2PR95 340 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 ERICH2A1L162 156 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 BTBD18B2RXH4 712 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 PLEKHA8P1O95397 391 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 DEXIO95424 95 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 MRPL12P52815 198 aaKnown RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 STX17P56962 302 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 SEPT2Q15019 361 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 PPP2R5BQ15173 497 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 CERKLQ49MI3 558 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 STAG2Q8N3U4 1231 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.32□□□□□ -0.446e-7■■■■■ 48.9
CUX1-204ENST00000393824 MTMR4Q9NYA4 1195 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 ADM5C9JUS6 153 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 N4BP3O15049 544 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 GH2P01242 217 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 VEGFAP15692 232 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 SPAG1Q07617 926 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 ACTN3Q08043 901 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 KRT31Q15323 416 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 KLHL10Q6JEL2 608 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 SND1Q7KZF4 910 aaKnown RBP eCLIP12.32□□□□□ -0.44
CUX1-204ENST00000393824 ZNF572Q7Z3I7 529 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 RABEP2Q9H5N1 569 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 VCPKMTQ9H867 229 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 CD248Q9HCU0 757 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 ADARB2Q9NS39 739 aaKnown RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 SWAP70Q9UH65 585 aa12.32□□□□□ -0.44
CUX1-204ENST00000393824 COL2A1P02458 1487 aaPredicted RBP12.32□□□□□ -0.44
CUX1-204ENST00000393824 SSC5DA1L4H1 1573 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PHF20L1A8MW92 1017 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PDE2AO00408 941 aaPredicted RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 GOLGA8HP0CJ92 632 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 CDC25AP30304 524 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms