RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PURBQ96QR8 312 aaKnown RBP13.97□□□□□ -0.17
CIITA-202ENST00000381835 TAAR1Q96RJ0 339 aa13.97□□□□□ -0.17
CIITA-202ENST00000381835 SPATC1LQ9H0A9 340 aa13.97□□□□□ -0.17
CIITA-202ENST00000381835 TXNRD2Q9NNW7 524 aa13.97□□□□□ -0.17
CIITA-202ENST00000381835 MAP3K20Q9NYL2 800 aaKnown RBP13.97□□□□□ -0.17
CIITA-202ENST00000381835 PP2D1A8MPX8 630 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 CYP3A4P08684 503 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 TKFCQ3LXA3 575 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 MOXD1Q6UVY6 613 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 NCAPG2Q86XI2 1143 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 SMC1BQ8NDV3 1235 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 HAS1Q92839 578 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 NAT10Q9H0A0 1025 aaKnown RBP13.96□□□□□ -0.17
CIITA-202ENST00000381835 PNMA3Q9UL41 463 aa13.96□□□□□ -0.17
CIITA-202ENST00000381835 CNMDO75829 334 aa13.96□□□□□ -0.18
CIITA-202ENST00000381835 RIOX2Q8IUF8 465 aa13.96□□□□□ -0.18
CIITA-202ENST00000381835 SAMD3Q8N6K7 520 aa13.96□□□□□ -0.18
CIITA-202ENST00000381835 AOPEPQ8N6M6 819 aa13.96□□□□□ -0.18
CIITA-202ENST00000381835 SMCR8Q8TEV9 937 aaPredicted RBP13.96□□□□□ -0.18
CIITA-202ENST00000381835 A1CFQ9NQ94 594 aaKnown RBP13.96□□□□□ -0.18
CIITA-202ENST00000381835 RBPJLQ9UBG7 517 aa13.96□□□□□ -0.18
CIITA-202ENST00000381835 A0A087X0B3 334 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 EIF2AK2P19525 551 aaKnown RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 CIITAP33076 1130 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 TMEM266Q2M3C6 531 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 LONRF3Q496Y0 759 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 NYAP1Q6ZVC0 841 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 RASAL3Q86YV0 1011 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 ERCC4Q92889 916 aaPredicted RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 MBOAT7Q96N66 472 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 RMDN3Q96TC7 470 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 TRMT1Q9NXH9 659 aaKnown RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 TXLNAP40222 546 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 UBA7P41226 1012 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 CCZ1BP86790 482 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 CCZ1P86791 482 aaPredicted RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 ZRSR1Q15695 479 aaKnown RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 Q3C1V9 767 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 Q4G0T1 1027 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 ANKRD35Q8N283 1001 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 CNNM3Q8NE01 707 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 CHST13Q8NET6 341 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 IL31RAQ8NI17 732 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 LENG9Q96B70 501 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 DHX58Q96C10 678 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 MOV10L1Q9BXT6 1211 aaKnown RBP13.95□□□□□ -0.18
CIITA-202ENST00000381835 CYP39A1Q9NYL5 469 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 PCDHA12Q9UN75 941 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 RABGAP1Q9Y3P9 1069 aa13.95□□□□□ -0.18
CIITA-202ENST00000381835 POTEMA6NI47 508 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 ARHGEF16Q5VV41 709 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 RGMBQ6NW40 437 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 RASSF8Q8NHQ8 419 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 PTPN18Q99952 460 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 KCNMB3Q9NPA1 279 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 SERTAD1Q9UHV2 236 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 DDX41Q9UJV9 622 aaKnown RBP13.94□□□□□ -0.18
CIITA-202ENST00000381835 ABT1Q9ULW3 272 aaKnown RBP13.94□□□□□ -0.18
CIITA-202ENST00000381835 RPTORQ8N122 1335 aa13.94□□□□□ -0.18
CIITA-202ENST00000381835 IGLV3-22A0A075B6J6 115 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 MYCLP12524 364 aaPredicted RBP13.93□□□□□ -0.18
CIITA-202ENST00000381835 ERCC3P19447 782 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 GSDMDP57764 484 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 CEP55Q53EZ4 464 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 KRBA2Q6ZNG9 492 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 ANKRD23Q86SG2 305 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 CCAR2Q8N163 923 aaKnown RBP13.93□□□□□ -0.18
CIITA-202ENST00000381835 IGSF22Q8N9C0 903 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 ETNPPLQ8TBG4 499 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 AK8Q96MA6 479 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 TIGD1Q96MW7 591 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 R3HDMLQ9H3Y0 253 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 PXMP2Q9NR77 195 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 LRWD1Q9UFC0 647 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 FBXO40Q9UH90 709 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 ZNF215Q9UL58 517 aaPredicted RBP13.93□□□□□ -0.18
CIITA-202ENST00000381835 MSH4O15457 936 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 FXR2P51116 673 aaKnown RBP eCLIP13.93□□□□□ -0.18
CIITA-202ENST00000381835 KARSQ15046 597 aaKnown RBP13.93□□□□□ -0.18
CIITA-202ENST00000381835 PGM5Q15124 567 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 WDR78Q5VTH9 848 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 SLFN12Q8IYM2 578 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 KIF18AQ8NI77 898 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 PLIN2Q99541 437 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 RAB34Q9BZG1 259 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 SLC45A1Q9Y2W3 748 aa13.93□□□□□ -0.18
CIITA-202ENST00000381835 ERVK-9P63128 1117 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 ERVK-24P63145 666 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 ANKRD13CQ8N6S4 541 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 ZNF397Q8NF99 534 aaPredicted RBP13.92□□□□□ -0.18
CIITA-202ENST00000381835 PDCD2LQ9BRP1 358 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 TLL2Q9Y6L7 1015 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 LCTP09848 1927 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 TBX3O15119 743 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 TOMM70O94826 608 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 SLC25A27O95847 323 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 MRPS9P82933 396 aaKnown RBP13.92□□□□□ -0.18
CIITA-202ENST00000381835 PDIA5Q14554 519 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 PCNX4Q63HM2 1172 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 CABP7Q86V35 215 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms