RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CPP00450 1065 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 LSAMPQ13449 338 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 UBXN11Q5T124 520 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 PHF19Q5T6S3 580 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 ACBD5Q5T8D3 534 aaPredicted RBP3.59□□□□□ -1.84
VPS13A-206ENST00000376646 STEAP3Q658P3 488 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 MCTP2Q6DN12 878 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 KCNT2Q6UVM3 1135 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 PRRT2Q7Z6L0 340 aaPredicted RBP3.59□□□□□ -1.84
VPS13A-206ENST00000376646 RIOX2Q8IUF8 465 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 ARHGEF4Q9NR80 690 aa3.59□□□□□ -1.84
VPS13A-206ENST00000376646 THBS2P35442 1172 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 SLC6A11P48066 632 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 PLP2Q04941 152 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 ADAM9Q13443 819 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 ADAMTS17Q8TE56 1095 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 YIPF4Q9BSR8 244 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 PHF20Q9BVI0 1012 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 IGSF5Q9NSI5 407 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 COA3Q9Y2R0 106 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-206ENST00000376646 TCRBV5S2A0A599 114 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 CCDC85CA6NKD9 419 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 DDX3XO00571 662 aaKnown RBP eCLIP3.58□□□□□ -1.84
VPS13A-206ENST00000376646 HGSO14964 777 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-206ENST00000376646 PRODHO43272 600 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 SMARCA5O60264 1052 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-206ENST00000376646 NTRK3Q16288 839 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 RGL3Q3MIN7 710 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 KRTAP5-4Q6L8H1 288 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 TTLL7Q6ZT98 887 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 FAM126BQ8IXS8 530 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 KYQ8NBH2 561 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 PIP4K2CQ8TBX8 421 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.58□□□□□ -1.84
VPS13A-206ENST00000376646 CCDC140Q96MF4 163 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 LNPKQ9C0E8 428 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 NPFFR2Q9Y5X5 522 aa3.58□□□□□ -1.84
VPS13A-206ENST00000376646 AGRPO00253 132 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 LTFP02788 710 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 COL6A2P12110 1019 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 GJA9P57773 515 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 NFKB2Q00653 900 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 GRIN1Q05586 938 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 TESK1Q15569 626 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 TMC5Q6UXY8 1006 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 SPATC1Q76KD6 591 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 ZC3H18Q86VM9 953 aaKnown RBP3.57□□□□□ -1.84
VPS13A-206ENST00000376646 KCTD13Q8WZ19 329 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 GMLQ99445 158 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 KCNJ15Q99712 375 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 PCDHB4Q9Y5E5 795 aa3.57□□□□□ -1.84
VPS13A-206ENST00000376646 H7BY64 318 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 SLC27A2O14975 620 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 RPL13P26373 211 aaKnown RBP3.56□□□□□ -1.84
VPS13A-206ENST00000376646 GTF2A2P52657 109 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 TEPPQ6URK8 271 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 OSBP2Q969R2 916 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 MYOTQ9UBF9 498 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 ZNF652Q9Y2D9 606 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 ASXL2Q76L83 1435 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 TADA3O75528 432 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 DGKIO75912 1065 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 LRG1P02750 347 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 NKX3-2P78367 333 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 MAP4K2Q12851 820 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 RAB33AQ14088 237 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 PRR31Q5SQ13 230 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 SLC43A3Q8NBI5 491 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 AARSD1Q9BTE6 412 aaKnown RBP3.56□□□□□ -1.84
VPS13A-206ENST00000376646 EPN3Q9H201 632 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 EPB41L1Q9H4G0 881 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 DTLQ9NZJ0 730 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 PFDN2Q9UHV9 154 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 CROTQ9UKG9 612 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 TRAF6Q9Y4K3 522 aa3.56□□□□□ -1.84
VPS13A-206ENST00000376646 PABPC1P11940 636 aaKnown RBP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 MLLT6P55198 1093 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 HSP90AA2PQ14568 343 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 PRAMEF18Q5VWM3 479 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 GGNQ86UU5 652 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 TXNDC5Q8NBS9 432 aaKnown RBP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 CLEC4DQ8WXI8 215 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 TOE1Q96GM8 510 aaKnown RBP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 GPR27Q9NS67 375 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 NKRFO15226 690 aaKnown RBP eCLIP3.55□□□□□ -1.84
VPS13A-206ENST00000376646 NAALADL2Q58DX5 795 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 EMC4Q5J8M3 183 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 ZFYVE27Q5T4F4 411 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 NSMFQ6X4W1 530 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 TRIM55Q9BYV6 548 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 TMPRSS5Q9H3S3 457 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 INVSQ9Y283 1065 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 TELO2Q9Y4R8 837 aa3.55□□□□□ -1.84
VPS13A-206ENST00000376646 FOXB2Q5VYV0 432 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 HHIPL2Q6UWX4 724 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 TTLL6Q8N841 843 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 ASH2LQ9UBL3 628 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 E9PSI1 815 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 ONECUT2O95948 504 aa3.54□□□□□ -1.84
VPS13A-206ENST00000376646 ZNF28P17035 718 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms