RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 NOD1Q9Y239 953 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 INSL6Q9Y581 213 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 TRIP12Q14669 1992 aaPredicted RBP10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 ATG2AQ2TAZ0 1938 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 EPG5Q9HCE0 2579 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 PLXNA3P51805 1871 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 MYH4Q9Y623 1939 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 FDX1P10109 184 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 FOXK2Q01167 660 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 IKBKEQ14164 716 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 TTBK2Q6IQ55 1244 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 CCDC62Q6P9F0 684 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 TMEM192Q8IY95 271 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 AFG1LQ8WV93 481 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 CRBNQ96SW2 442 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 HAUS7Q99871 368 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 UPF3BQ9BZI7 483 aaKnown RBP10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 NSUN3Q9H649 340 aaKnown RBP10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 INCENPQ9NQS7 918 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 HDAC6Q9UBN7 1215 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 CCPG1Q9ULG6 757 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 SYNPO2Q9UMS6 1093 aa10.1□□□□□ -0.79
HMGB1P39-201ENST00000366304 ZNF292O60281 2723 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 VPS13AQ96RL7 3174 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 STXBP3O00186 592 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 GRM6O15303 877 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 NMT2O60551 498 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 KPNA6O60684 536 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 PLA2G6O60733 806 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 MMP3P08254 477 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ATP5JP18859 108 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 SLC16A2P36021 539 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ZXDAP98168 799 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ARHGAP1Q07960 439 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 PPP2R5BQ15173 497 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 PTPROQ16827 1216 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 FAM160B2Q86V87 743 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 FBXO11Q86XK2 927 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ERC1Q8IUD2 1116 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 MYOCDQ8IZQ8 938 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 FBXL6Q8N531 539 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 DBF4BQ8NFT6 615 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 NEDD1Q8NHV4 660 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 CHURC1Q8WUH1 139 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 OSBP2Q969R2 916 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ASIC4Q96FT7 647 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 KCNK17Q96T54 332 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 IL17RBQ9NRM6 502 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 GTF2IRD1Q9UHL9 959 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 ISY1Q9ULR0 285 aaKnown RBP10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 PLIN4Q96Q06 1357 aa10.09□□□□□ -0.79
HMGB1P39-201ENST00000366304 NCOR2Q9Y618 2525 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 PDGFBP01127 241 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 ICAM1P05362 532 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 TXNP10599 105 aaKnown RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 CALML3P27482 149 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 SLC1A4P43007 532 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 IKQ13123 557 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 CAMK1Q14012 370 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 LY6KQ17RY6 165 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 DMRTA1Q5VZB9 504 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 RCSD1Q6JBY9 416 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 ITPRIPQ8IWB1 547 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 SIRT2Q8IXJ6 389 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 ZNF444Q8N0Y2 327 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 CCDC155Q8N6L0 562 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 SCFD2Q8WU76 684 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 DDRGK1Q96HY6 314 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 MSLNLQ96KJ4 702 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 RANBP17Q9H2T7 1088 aaKnown RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 CTNNA3Q9UI47 895 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 FAM50BQ9Y247 325 aa10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 KMT2BQ9UMN6 2715 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P39-201ENST00000366304 PTPDC1A2A3K4 754 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 LOC730098B7Z3J9 87 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 PROB1E7EW31 1015 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 H0Y858 1186 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 M0R2C6 588 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 NKRFO15226 690 aaKnown RBP eCLIP10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 CSPG5O95196 566 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 IFIT2P09913 472 aaKnown RBP10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 TFAP4Q01664 338 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 PTK7Q13308 1070 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 SMAD4Q13485 552 aaKnown RBP10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 ZKSCAN2Q63HK3 967 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 GIMAP6Q6P9H5 292 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 ATOH1Q92858 354 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 ZDHHC16Q969W1 377 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 ALG1Q9BT22 464 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 TLR9Q9NR96 1032 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 CLEC1BQ9P126 229 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 ADD3Q9UEY8 706 aaKnown RBP10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 MTMR7Q9Y216 660 aa10.07□□□□□ -0.8
HMGB1P39-201ENST00000366304 PRR23AA6NEV1 266 aa10.06□□□□□ -0.8
HMGB1P39-201ENST00000366304 HAS3O00219 553 aa10.06□□□□□ -0.8
HMGB1P39-201ENST00000366304 EFCAB14O75071 495 aa10.06□□□□□ -0.8
HMGB1P39-201ENST00000366304 UPP2O95045 317 aa10.06□□□□□ -0.8
HMGB1P39-201ENST00000366304 AMHP03971 560 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms