RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 MEIS1O00470 390 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 FGFR1OPO95684 399 aaKnown RBP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 MYL1P05976 194 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 LDHCP07864 332 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 ACTN1P12814 892 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 ECM1Q16610 540 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 SLC9C1Q4G0N8 1177 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 UNC13DQ70J99 1090 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 FNBP4Q8N3X1 1017 aaPredicted RBP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 SIK3Q9Y2K2 1263 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 ITGB4P16144 1822 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 NDUFAB1O14561 156 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 TCP1P17987 556 aaKnown RBP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 CENPPQ6IPU0 288 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 DHX37Q8IY37 1157 aaKnown RBP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 RAB34Q9BZG1 259 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 NYXQ9GZU5 481 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 CUEDC2Q9H467 287 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 ZNF287Q9HBT7 754 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 PAPPAQ13219 1627 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 H0YHG0 523 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 STAT3P40763 770 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 PRPHP41219 470 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 GSTO1P78417 241 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 KLHL30Q0D2K2 578 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 CFAP221Q4G0U5 840 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 DCAF17Q5H9S7 520 aaPredicted RBP15.89■□□□□ 0.13
CPSF7-201ENST00000340437 FAM83BQ5T0W9 1011 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 HAUS3Q68CZ6 603 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 GALNT17Q6IS24 598 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 TLR10Q9BXR5 811 aa15.89■□□□□ 0.13
CPSF7-201ENST00000340437 CLSTN1O94985 981 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 KLRC1P26715 233 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 AARSP49588 968 aaKnown RBP eCLIP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 RNF187Q5TA31 235 aaPredicted RBP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 ZNF804AQ7Z570 1209 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 AMIGO3Q86WK7 504 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 ZIM3Q96PE6 472 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L15C9J2P7 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L13C9JLJ4 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L11C9JVI0 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L18D6R9N7 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L22D6RA61 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L17D6RBQ6 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L19D6RCP7 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L20D6RJB6 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 KCNK3O14649 394 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 OPA1O60313 960 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 RFC4P35249 363 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 MAGEA9P43362 315 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L24Q0WX57 530 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 NNTQ13423 1086 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 USP17L6PQ6QN14 398 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 ZSCAN29Q8IWY8 852 aaPredicted RBP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 TAF4BQ92750 862 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 SPAG5Q96R06 1193 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 AP1M1Q9BXS5 423 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 GUCY1A3Q02108 690 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 FAM26FQ5R3K3 315 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 PDXDC1Q6P996 788 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 ADAT2Q7Z6V5 191 aaKnown RBP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 AENQ8WTP8 325 aaKnown RBP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 RAD54LQ92698 747 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 TRIM31Q9BZY9 425 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 DDX25Q9UHL0 483 aaKnown RBP15.88■□□□□ 0.13
CPSF7-201ENST00000340437 PCDHA12Q9UN75 941 aa15.88■□□□□ 0.13
CPSF7-201ENST00000340437 KLHDC7AQ5VTJ3 777 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 FAM196BA6NMK8 535 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 BACH1O14867 736 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 CEP104O60308 925 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 KCNMA1Q12791 1236 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 COASYQ13057 564 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 DDX42Q86XP3 938 aaKnown RBP eCLIP15.87■□□□□ 0.13
CPSF7-201ENST00000340437 RTCBQ9Y3I0 505 aaKnown RBP15.87■□□□□ 0.13
CPSF7-201ENST00000340437 COL4A3BPQ9Y5P4 624 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 FAM169AQ9Y6X4 670 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 SHANK3Q9BYB0 1731 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 POTEB3A0JP26 581 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 POTECB2RU33 542 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 ATP2C2O75185 946 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 EPHB4P54760 987 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 POTEBQ6S5H4 581 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 GPBP1Q86WP2 473 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 OR2W6PQ8NHA6 318 aa15.87■□□□□ 0.13
CPSF7-201ENST00000340437 RPGRQ92834 1020 aaKnown RBP15.87■□□□□ 0.13
CPSF7-201ENST00000340437 ZC3H4Q9UPT8 1303 aaKnown RBP15.86■□□□□ 0.13
CPSF7-201ENST00000340437 A0A087X0T9 212 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 FAM228BP0C875 321 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 SCNN1DP51172 638 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 PPFIA1Q13136 1202 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 ADAM9Q13443 819 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 ODF2Q5BJF6 829 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 TTMPQ5BVD1 217 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 MMGT1Q8N4V1 131 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 DAGLBQ8NCG7 672 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 AKR1B1P15121 316 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 GTF2A1P52655 376 aaPredicted RBP15.86■□□□□ 0.13
CPSF7-201ENST00000340437 GTF2IP78347 998 aa15.86■□□□□ 0.13
CPSF7-201ENST00000340437 NAA35Q5VZE5 725 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms