RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RNF146Q9NTX7 359 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 VAV3Q9UKW4 847 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 RABGAP1Q9Y3P9 1069 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 RPTORQ8N122 1335 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 MYMKA6NI61 221 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SLC26A4O43511 780 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 GRIN3BO60391 1043 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 MED24O75448 989 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 ZNF18P17022 549 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 CDK11BP21127 795 aaKnown RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 UBASH3AP57075 661 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 RPS6P62753 249 aaKnown RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SETQ01105 290 aaPredicted RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SEMA3FQ13275 785 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 CCDC144BQ3MJ40 725 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 NSMFQ6X4W1 530 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 DYMQ7RTS9 669 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 RIPK3Q9Y572 518 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 LOC285556D6RIA3 1793 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 E9PMD0 336 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 CBFA2T2O43439 604 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 COBLO75128 1261 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 LRCH2Q5VUJ6 765 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 RNF207Q6ZRF8 634 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 MOB2Q70IA6 237 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 GIMAP8Q8ND71 665 aaPredicted RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 IL31RAQ8NI17 732 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 NELFBQ8WX92 580 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 LRRC27Q9C0I9 530 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 TAF1DQ9H5J8 278 aaPredicted RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 MAP3K20Q9NYL2 800 aaKnown RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 RWDD2AQ9UIY3 292 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 ZNF214Q9UL59 606 aaPredicted RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 ADAMTS5Q9UNA0 930 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 POTEFA5A3E0 1075 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 IQCA1LA6NCM1 817 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 SPDYE16A6NNV3 312 aaPredicted RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 SSBP05455 408 aaKnown RBP eCLIP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 POTEIP0CG38 1075 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 OAZ1P54368 228 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 TMEM132BQ14DG7 1078 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 TPD52L1Q16890 204 aaPredicted RBP14.98□□□□□ -0.01
HMGB1-202ENST00000339872 POTEGQ6S5H5 508 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 POTEEQ6S8J3 1075 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 ADSSL1Q8N142 457 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 SAMD3Q8N6K7 520 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 SLC5A5Q92911 643 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 OTUD5Q96G74 571 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 CLMNQ96JQ2 1002 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 KCNF1Q9H3M0 494 aa14.98□□□□□ -0.01
HMGB1-202ENST00000339872 MEIS1O00470 390 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 STIM1Q13586 685 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 TREML2Q5T2D2 321 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 FILIP1Q7Z7B0 1213 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 CATSPER3Q86XQ3 398 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 ANKRD13AQ8IZ07 590 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 DDX12PQ92771 950 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 TAAR1Q96RJ0 339 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 MXRA8Q9BRK3 442 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 ZNF577Q9BSK1 485 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 STK24Q9Y6E0 443 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 CHMP2AO43633 222 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 GAS7O60861 476 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 PSMD10O75832 226 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 ARP10275 920 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 EIF2AK2P19525 551 aaKnown RBP14.97□□□□□ -0.01
HMGB1-202ENST00000339872 RPA1P27694 616 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 PLS1Q14651 629 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 GADL1Q6ZQY3 521 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 UNC13DQ70J99 1090 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 TMC6Q7Z403 805 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 HOXC10Q9NYD6 342 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 MYPNQ86TC9 1320 aa14.97□□□□□ -0.01
HMGB1-202ENST00000339872 FRMPD4Q14CM0 1322 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 EML1O00423 815 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 PLA2G4BP0C869 781 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 FCER1AP12319 257 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 IDEP14735 1019 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 ITGB5P18084 799 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 CYP4A11Q02928 519 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 PCNX4Q63HM2 1172 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 CNNM4Q6P4Q7 775 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 OTOP1Q7RTM1 612 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 NAP1L5Q96NT1 182 aaPredicted RBP14.96□□□□□ -0.01
HMGB1-202ENST00000339872 TEX13BQ9BXU2 312 aa14.96□□□□□ -0.01
HMGB1-202ENST00000339872 PVALEFA0A1B0GWK0 134 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PSMA7O14818 248 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 IRF6O14896 467 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 SPATA31C1P0DKV0 1188 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PPATQ06203 517 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 STK4Q13043 487 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PPP2R5CQ13362 524 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 BAATQ14032 418 aaPredicted RBP14.95□□□□□ -0.02
HMGB1-202ENST00000339872 CDKAL1Q5VV42 579 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 ERO1BQ86YB8 467 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 HPS3Q969F9 1004 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 RMDN3Q96TC7 470 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 EIF2AK1Q9BQI3 630 aaKnown RBP14.95□□□□□ -0.02
HMGB1-202ENST00000339872 A0A0G2JMZ2 1700 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 TRIM49BA6NDI0 452 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms