RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PSMC5P62195 406 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 XKR3Q5GH77 459 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 ARMCX5Q6P1M9 558 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 ELOA2Q8IYF1 753 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CGNQ9P2M7 1197 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 DNAI1Q9UI46 699 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 DGAT1O75907 488 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 H2AFZP0C0S5 128 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 FDPSP14324 419 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 MTMR1Q13613 665 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 H2AFVQ71UI9 128 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 PSPC1Q8WXF1 523 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 MKL1Q969V6 931 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 AKT1S1Q96B36 256 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 XPO4Q9C0E2 1151 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 EMILIN3Q9NT22 766 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 ZDHHC9Q9Y397 364 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 WNT10BO00744 389 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 PLA2G4BP0C869 781 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 DDIT3P35638 169 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 FKBP1BP68106 108 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 TAF1CQ15572 869 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 MIS18BP1Q6P0N0 1132 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CYP26C1Q6V0L0 522 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 FMR1NBQ8N0W7 255 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 GJA10Q969M2 543 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.56□□□□□ -1.21e-7■■■■■ 68.3
SF3B1-201ENST00000335508 FANCLQ9NW38 375 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 TRMT1Q9NXH9 659 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 TCRBV5S4A2TA0A5A2 114 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 LRRIQ4A6NIV6 560 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 BACE1P56817 501 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ETF1P62495 437 aaKnown RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ZNF658Q5TYW1 1059 aaPredicted RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 C9orf131Q5VYM1 1079 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 SAMD7Q7Z3H4 446 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 NELFCDQ8IXH7 590 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ADGRF4Q8IZF3 695 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TTC39CQ8N584 583 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TCP11Q8WWU5 503 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PPP1R9BQ96SB3 815 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 JADE2Q9NQC1 790 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TSKSQ9UJT2 592 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ABT1Q9ULW3 272 aaKnown RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 NCOR1O75376 2440 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 MACROD2A1Z1Q3 448 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 K7ERI5 159 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 DDX39AO00148 427 aaKnown RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 NEBLO76041 1014 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 LDHAP00338 332 aaKnown RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PLCG1P19174 1290 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 OAZ1P54368 228 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 HUNKP57058 714 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 CCDC122Q5T0U0 273 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TUBGCP2Q9BSJ2 902 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 C1orf112Q9NSG2 853 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TAB2Q9NYJ8 693 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 MTUS1Q9ULD2 1270 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 NMT2O60551 498 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ALDH1A1P00352 501 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 RPLP2P05387 115 aaKnown RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 MAF1Q9H063 256 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PPP1R9AQ9ULJ8 1098 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PITPNM2Q9BZ72 1349 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 INO80B-WBP1J3KQ70 363 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TMEM191BP0C7N4 346 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 CD19P15391 556 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TNFAIP3P21580 790 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 RESP18Q5W5W9 173 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 SEPT1Q8WYJ6 367 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 JMJD4Q9H9V9 463 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PANK4Q9NVE7 773 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.55□□□□□ -1.2
SF3B1-201ENST00000335508 PFASO15067 1338 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 CNTNAP5Q8WYK1 1306 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ATP2A1O14983 1001 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 GNAT1P11488 350 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TNNI1P19237 187 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 NTRK3Q16288 839 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 CEP112Q8N8E3 955 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 ACCSQ96QU6 501 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 TMEM39BQ9GZU3 492 aa7.55□□□□□ -1.2
SF3B1-201ENST00000335508 IFT172Q9UG01 1749 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 FSD2A1L4K1 749 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 MXI1P50539 228 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ZBED6P86452 979 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 LIN9Q5TKA1 542 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 SARM1Q6SZW1 724 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 EPSTI1Q96J88 318 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TRIM9Q9C026 710 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 MROH8Q9H579 483 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 GSTTP1A0A1W2PQM5 241 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 SHTN1A0MZ66 631 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 KCNJ18B7U540 433 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 K7ENM7 598 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 SLU7O95391 586 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 HOXC6P09630 235 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 INHBEP58166 350 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 PNOCQ13519 176 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms