RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MAFGO15525 162 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 CYP2C8P10632 490 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 EIF2AK2P19525 551 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 CCND2P30279 289 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 TYRO3Q06418 890 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 PPP2R5CQ13362 524 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 POSTNQ15063 836 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 TMEM119Q4V9L6 283 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 ARHGEF16Q5VV41 709 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 KRT79Q5XKE5 535 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 CKAP2LQ8IYA6 745 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 CEP57L1Q8IYX8 460 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 ABRAQ8N0Z2 381 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 ANKRD35Q8N283 1001 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 PDILTQ8N807 584 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 GPRC5AQ8NFJ5 357 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 SMCR8Q8TEV9 937 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 DHX58Q96C10 678 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 GPRASP2Q96D09 838 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 WDR11Q9BZH6 1224 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 GOLGA6L3A6NEY3 463 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 POTEMA6NI47 508 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 TMEM88BA6NKF7 163 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 MARCH6O60337 910 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 NR3C2P08235 984 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 STAT6P42226 847 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 UBXN2AP68543 259 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 SEMA3FQ13275 785 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 KARSQ15046 597 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 FAM110CQ1W6H9 321 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 Q3C1V9 767 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 RRAGBQ5VZM2 374 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 HAUS3Q68CZ6 603 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 NCAPG2Q86XI2 1143 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 CALML4Q96GE6 196 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 KBTBD4Q9NVX7 518 aa16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 ADD3Q9UEY8 706 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-202ENST00000334448 ASTN1O14525 1302 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 POTEB2H3BUK9 544 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 PLCG1P19174 1290 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 MUTP22033 750 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 CDC25AP30304 524 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 SARSP49591 514 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 GRB10Q13322 594 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 STX1AQ16623 288 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 SASS6Q6UVJ0 657 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 OTOP1Q7RTM1 612 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 TRIML1Q8N9V2 468 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 ERMNQ8TAM6 284 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 SNX29Q8TEQ0 813 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 PAGE5Q96GU1 130 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 CDHR1Q96JP9 859 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 PNMA5Q96PV4 448 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 NT5C3AQ9H0P0 336 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 AGO4Q9HCK5 861 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 KCNH7Q9NS40 1196 aa16.78■□□□□ 0.28
CCDC88C-202ENST00000334448 LCTP09848 1927 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 IPO5O00410 1097 aaKnown RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 DHX15O43143 795 aaKnown RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 GTPBP6O43824 516 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 PEX10O60683 326 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 ARP10275 920 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 ICAM3P32942 547 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 ALDH5A1P51649 535 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 MKRN3Q13064 507 aaKnown RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 MTMR1Q13613 665 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 KCTD2Q14681 263 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 LRCH2Q5VUJ6 765 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 CNNM4Q6P4Q7 775 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 NLRX1Q86UT6 975 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 MORC4Q8TE76 937 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 LRRC15Q8TF66 581 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 MTRQ99707 1265 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 ZNF577Q9BSK1 485 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 POLR3CQ9BUI4 534 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 TBC1D22BQ9NU19 505 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 ANO10Q9NW15 660 aa16.77■□□□□ 0.28
CCDC88C-202ENST00000334448 B4DLN1 442 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 IGF2BP3O00425 579 aaKnown RBP eCLIP16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 GAS7O60861 476 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 EIF3JO75822 258 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 FCER1AP12319 257 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 RPA1P27694 616 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 MRE11P49959 708 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 SREBF2Q12772 1141 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 DPYDQ12882 1025 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 PNOCQ13519 176 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 NEK9Q8TD19 979 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 GJA10Q969M2 543 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 FGD4Q96M96 766 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 PURBQ96QR8 312 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 TEKT3Q9BXF9 490 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 PANK2Q9BZ23 570 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 BLOC1S4Q9NUP1 217 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 PCDHA5Q9Y5H7 936 aa16.76■□□□□ 0.27
CCDC88C-202ENST00000334448 NFASCO94856 1347 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 SOWAHBA6NEL2 793 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 FOXN1O15353 648 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 STRNO43815 780 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 RGS20O76081 388 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms