RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CD248Q9HCU0 757 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 C6orf50Q9HD87 102 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 MTRF1LQ9UGC7 380 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 RASAL2Q9UJF2 1139 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ERVV-1B6SEH8 477 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ABLIM1O14639 778 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CTNND1O60716 968 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 KIF4AO95239 1232 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 LACTBP83111 547 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 EHHADHQ08426 723 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 STK4Q13043 487 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 SOGA3Q5TF21 947 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ANKRD40Q6AI12 368 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 NEK9Q8TD19 979 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 PARP2Q9UGN5 583 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 INTUQ9ULD6 942 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 DAAM1Q9Y4D1 1078 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 DUSP10Q9Y6W6 482 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 BUB1BO60566 1050 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 H2AFZP0C0S5 128 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 MYBP10242 640 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 HSD17B3P37058 310 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 SLC7A5Q01650 507 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 MIIPQ5JXC2 388 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 H2AFVQ71UI9 128 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 PNMA8AQ86V59 439 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ANKRD13CQ8N6S4 541 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CCT6BQ92526 530 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 MTMR8Q96EF0 704 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 SH3GL3Q99963 347 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 TMEM109Q9BVC6 243 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 OSBPL7Q9BZF2 842 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ZNF287Q9HBT7 754 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 NOD2Q9HC29 1040 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 TMEM59LQ9UK28 342 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 TTC7AQ9ULT0 858 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CEP104O60308 925 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 AGTP01019 485 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 NUDT17P0C025 328 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CEBPAP49715 358 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 RWDD2BP57060 319 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 HDLBPQ00341 1268 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ZNF844Q08AG5 666 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 MKRN3Q13064 507 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 KRT79Q5XKE5 535 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 AP1ARQ63HQ0 302 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 C4orf32Q8N8J7 132 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CASKIN2Q8WXE0 1202 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CCDC85AQ96PX6 553 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ATP8A2Q9NTI2 1148 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CNTNAP5Q8WYK1 1306 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ESYT3A0FGR9 886 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 FAM187AA6NFU0 413 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ERVK-9P63128 1117 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 DHX9Q08211 1270 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 RBBP5Q15291 538 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 PPP4R3CPQ6ZMV5 832 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 NLRP10Q86W26 655 aa5.24□□□□□ -1.57
PTPN13-201ENST00000316707 NAP1L4Q99733 375 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 CRNKL1Q9BZJ0 848 aaKnown RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 ZNF330Q9Y3S2 320 aaPredicted RBP5.24□□□□□ -1.57
PTPN13-201ENST00000316707 KDM3BQ7LBC6 1761 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 SLC26A4O43511 780 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 RAPGEF1Q13905 1077 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 TLDC1Q6P9B6 456 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 TAOK1Q7L7X3 1001 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 BAP1Q92560 729 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 GREM2Q9H772 168 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 ARPP21Q9UBL0 812 aaPredicted RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 CNOT7Q9UIV1 285 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 NOVA2Q9UNW9 492 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 PRKAB2O43741 272 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 NEBLO76041 1014 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 GCKP35557 465 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 SLC1A4P43007 532 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 SSR1P43307 286 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 DRG2P55039 364 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 PARP10Q53GL7 1025 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 EARS2Q5JPH6 523 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 ERMARDQ5T6L9 678 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 KLHL7Q8IXQ5 586 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 SCFD2Q8WU76 684 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 MXD3Q9BW11 206 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 RPL26L1Q9UNX3 145 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 C15orf41Q9Y2V0 281 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 UTP11Q9Y3A2 253 aaKnown RBP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 ESYT2A0FGR8 921 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 RTN2O75298 545 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 C6orf118Q5T5N4 469 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 MYOCDQ8IZQ8 938 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 SEC14L1Q92503 715 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 CCDC134Q9H6E4 229 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 EBF2Q9HAK2 575 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.23□□□□□ -1.57
PTPN13-201ENST00000316707 COL4A3BPQ9Y5P4 624 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 USP54Q70EL1 1684 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 CCDC189A1A4V9 331 aa5.23□□□□□ -1.57
PTPN13-201ENST00000316707 E7ENQ6 273 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms